View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11274_high_56 (Length: 240)
Name: NF11274_high_56
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_high_56 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40141093 - 40140869
Alignment:
| Q |
1 |
cttcagtttcttcatatcacaagcgagagatactgtatggaccatatgaggttgtttggccacttcctcctggtgtgaacaaggacaatgtatcagctga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40141093 |
cttcagtttcttcatatcacaagcgagagatactgtatggaccatatgaggttgtttggccacttcctcatggtgtgaacaaggacaatgtatcagctga |
40140994 |
T |
|
| Q |
101 |
atttttgtaagttatattttagtcttactcacatggttcttgactacagtctcnnnnnnnaattggtttcactggctataatttaaagaaaaacctc--t |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40140993 |
atttttgtaagttatattttagtcttactcacatggttcttgactatagtctctttttttaattggtttcactggctataatttaaagaaaaacctctat |
40140894 |
T |
|
| Q |
199 |
tttaaattatagattgaaaatcctg |
223 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
40140893 |
tttaaattatagattgacaatcctg |
40140869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University