View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_11 (Length: 557)
Name: NF11274_low_11
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 253 - 552
Target Start/End: Complemental strand, 34532133 - 34531834
Alignment:
| Q |
253 |
ctagctacgattaaaccgtagttaagaggtttgacccgattcaatatggttcaaccagactgcaatatagagaaccaacctaccgacgagttggtcggtt |
352 |
Q |
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| T |
34532133 |
ctagctacgattaaaccgtagttaagaggtttgacccgattcaatatggttcaaccagactgcaatatagagaaccaacctaccgacgagttggtcggtt |
34532034 |
T |
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| Q |
353 |
ctttgttcaactggttgaaccgatctgttcaattttaaaacattagtatattgtgatggttaacttggttttcatattcattcaggggtttcatagcaac |
452 |
Q |
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| T |
34532033 |
ctttgttcaactggttgaaccgatctgttcaattttaaaacattagtatattgtgatggttaacttggttttcatattcattcaggggtttcatagcaac |
34531934 |
T |
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| Q |
453 |
tgcacctgaggctggtcaactaatcactctacttttgaagctgttgaatcccaaaaagacaattgaagttggagtgtttactggatactctctgctcctc |
552 |
Q |
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| T |
34531933 |
tgcacctgaggctggtcaactaatcactctacttttgaagctgttgaatcccaaaaagacaattgaagttggagtgtttactggatactctcttctcctc |
34531834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 34532369 - 34532176
Alignment:
| Q |
18 |
gatactgctgtttaccctagagagcctgagcctctcaaagagctgaggaaagccagtgagaatcatccttggtaattattctatcttctgcaatgttttg |
117 |
Q |
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| T |
34532369 |
gatactgctgtttaccctagagagcctgagcctctcaaagagctgaggaaagccagtgagaatcatccttggtaattattctatcttctgcaatgttttg |
34532270 |
T |
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| Q |
118 |
aaattcggaccgaatatgg-accagtgaaacttcaagattatgatttaataggttcaatcagttcaacttcggttaaactggatgacagataga |
210 |
Q |
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| T |
34532269 |
aaattcggaccgaatatggaactagtgaaacttcaagattatgatttaataggttcaatcagttcaactacggttaaactggacgacagataga |
34532176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 34520106 - 34519961
Alignment:
| Q |
22 |
ctgctgtttaccctagagagcctgagcctctcaaagagctgaggaaagccagtgagaatcatccttggtaattattctatcttctgcaatgttttgaaat |
121 |
Q |
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| T |
34520106 |
ctgctgtttaccctagagagccaaagcctctcaaagagctgaggaatgccactgagaatcatccttggtaattattcaatct-----aatgttttgaaat |
34520012 |
T |
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| Q |
122 |
tcggaccgaatat-ggaccagtgaaacttcaagattatgatttaataggtt |
171 |
Q |
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| T |
34520011 |
tcaaaccgaagatctaatcagtgagacctcaagattatgatttaataggtt |
34519961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 545
Target Start/End: Complemental strand, 7589172 - 7589109
Alignment:
| Q |
482 |
tacttttgaagctgttgaatcccaaaaagacaattgaagttggagtgtttactggatactctct |
545 |
Q |
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| T |
7589172 |
tactcttgaagctgttgaatgctaaaaagacaattgaaattggagttttcactggatactctct |
7589109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 545
Target Start/End: Original strand, 42830331 - 42830371
Alignment:
| Q |
505 |
aaaaagacaattgaagttggagtgtttactggatactctct |
545 |
Q |
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| T |
42830331 |
aaaaagacaattgaagtaggagttttcactggatactctct |
42830371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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