View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_12 (Length: 554)
Name: NF11274_low_12
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Original strand, 13918758 - 13919278
Alignment:
| Q |
18 |
atcattaactgtcaaccgcgccatgctggtcacagcttcacagctggcatcatatgatcaattcaaggagatgattcttgagaagggtgttatgcgtgat |
117 |
Q |
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| T |
13918758 |
atcattgactgtgaaccgcgccatgctggtcacagcttcacagctggcttcatatgatcaattcaaggagatgattcttgagaagggtgttatgcgtgat |
13918857 |
T |
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| Q |
118 |
ggccttgggacccacgtgacagctagttttgcagcgggatttgtggcggcggttgcgtcgaatccggtggatgttattaaaacaagggtgatgaacatga |
217 |
Q |
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| T |
13918858 |
ggccttgggacccatgtgacagctagttttgcagcgggatttgtggcggcggttgcgtcgaatccagtggatgttattaagacaagggtgatgaacatga |
13918957 |
T |
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| Q |
218 |
aagtggaggctggaaaggaaccaccttatgctggtgctttggattgtgctttgaaaacagttcgtgctgagggtcctctggctctatacaagggatttat |
317 |
Q |
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| T |
13918958 |
aggtggaggctggaaaggaaccaccctatgctggtgctttggattgtgctttgaagacagttcgtgctgagggtcctatggctctttacaagggatttat |
13919057 |
T |
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| Q |
318 |
tcctacaatttcaaggcagggacctttcactgttgttctgtttgttactttggagcaagttcgcaagttgttgaaggatttctgagttgctagattgatg |
417 |
Q |
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| T |
13919058 |
tcctacaatttcaaggcagggacctttcactgttgttctgtttgttactttggagcaagttcgcaagttgttgaaggatttctgagttgctagattgatg |
13919157 |
T |
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| Q |
418 |
atggcgaagatttttagtttttaagttgattccaataaactctgttttattttttgtgttctaatgtggttgttctagatggtaattttgattaatgaaa |
517 |
Q |
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| T |
13919158 |
atggcgaagatttttagtttttaagttgattccaataaactctgttttaatttttgtcttctaatgtggttgttctagatggtaattttgattaatgaaa |
13919257 |
T |
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| Q |
518 |
accatgattttaaattgatgt |
538 |
Q |
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| T |
13919258 |
accatgattttaaattgatgt |
13919278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 115 - 400
Target Start/End: Original strand, 28830097 - 28830382
Alignment:
| Q |
115 |
gatggccttgggacccacgtgacagctagttttgcagcgggatttgtggcggcggttgcgtcgaatccggtggatgttattaaaacaagggtgatgaaca |
214 |
Q |
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| T |
28830097 |
gatgggcttgggacccatgtggtagcgagtttttcggcaggttttgtggccgcggttgcatcgaatccagtggatgtgattaagactagggtgatgaata |
28830196 |
T |
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| Q |
215 |
tgaaagtggaggctggaaaggaaccaccttatgctggtgctttggattgtgctttgaaaacagttcgtgctgagggtcctctggctctatacaagggatt |
314 |
Q |
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| T |
28830197 |
tgaaggtggaggctggatcgcctccaccttactccggtgccattgattgtgctttgaagactattcgtgctgagggtcctatggctctttataagggttt |
28830296 |
T |
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| Q |
315 |
tattcctacaatttcaaggcagggacctttcactgttgttctgtttgttactttggagcaagttcgcaagttgttgaaggatttct |
400 |
Q |
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| T |
28830297 |
tattcctacaattacaaggcagggaccgtttaccgttgtgttgtttgttacattggaacaggttcgtaagttgcttaaggatttct |
28830382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 46255127 - 46255193
Alignment:
| Q |
296 |
tggctctatacaagggatttattcctacaatttcaaggcagggacctttcactgttgttctgtttgt |
362 |
Q |
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| T |
46255127 |
tggctctttataagggttttattcctacaatttcaagacagggtccttttactgttgttctttttgt |
46255193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 46254950 - 46255010
Alignment:
| Q |
122 |
ttgggacccacgtgacagctagttttgcagcgggatttgtggcggcggttgcgtcgaatcc |
182 |
Q |
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| T |
46254950 |
ttgggacccacgtggtagcgagttttgcggcgggttttttggcggcggttgcgtcgaatcc |
46255010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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