View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11274_low_13 (Length: 541)

Name: NF11274_low_13
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11274_low_13
NF11274_low_13
[»] chr1 (8 HSPs)
chr1 (1-458)||(31320491-31320949)
chr1 (278-413)||(25965410-25965545)
chr1 (277-421)||(26101993-26102137)
chr1 (277-419)||(27461216-27461358)
chr1 (302-394)||(15417033-15417125)
chr1 (284-414)||(18795124-18795254)
chr1 (342-394)||(13807852-13807904)
chr1 (282-402)||(34381663-34381783)
[»] chr8 (5 HSPs)
chr8 (277-421)||(10866924-10867068)
chr8 (302-421)||(13530165-13530284)
chr8 (302-421)||(13619704-13619823)
chr8 (348-420)||(12774949-12775021)
chr8 (344-392)||(41505639-41505687)
[»] chr5 (5 HSPs)
chr5 (302-418)||(24846200-24846316)
chr5 (60-133)||(17459841-17459914)
chr5 (344-421)||(26070411-26070487)
chr5 (309-421)||(24130591-24130703)
chr5 (277-317)||(24410964-24411004)
[»] chr4 (6 HSPs)
chr4 (277-421)||(10576389-10576533)
chr4 (344-421)||(17339915-17339992)
chr4 (346-416)||(16442363-16442432)
chr4 (277-394)||(24925768-24925885)
chr4 (302-402)||(31859940-31860040)
chr4 (284-393)||(21167693-21167802)
[»] chr2 (7 HSPs)
chr2 (277-407)||(24047332-24047462)
chr2 (282-366)||(18116974-18117058)
chr2 (303-401)||(32276574-32276672)
chr2 (277-418)||(39730386-39730527)
chr2 (287-366)||(15454575-15454654)
chr2 (353-418)||(21505250-21505315)
chr2 (302-394)||(31449920-31450012)
[»] chr3 (2 HSPs)
chr3 (277-413)||(21829167-21829303)
chr3 (353-426)||(25919575-25919648)
[»] chr6 (5 HSPs)
chr6 (279-414)||(12972421-12972556)
chr6 (277-390)||(9943184-9943297)
chr6 (344-394)||(26512879-26512929)
chr6 (344-394)||(26517995-26518045)
chr6 (350-418)||(1755660-1755728)
[»] chr7 (4 HSPs)
chr7 (343-402)||(19140075-19140134)
chr7 (343-402)||(20739474-20739533)
chr7 (353-418)||(29544458-29544523)
chr7 (373-421)||(22532774-22532822)


Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 31320491 - 31320949
Alignment:
Q  1 atcctaaggaattgattcatctctaaggaggacacatggatgtttatggccattttgtcgtatagaaccttttggtgaccatcttcatccaaagaggttt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  31320491 atcctaaggaattcattcatctctaaggaggacacatggatgtttatggcctttttgttgtatagaaccttttggtgaccatcttcatccaaagaggttt 31320590  T
Q  101 ctagttttagtgaacttacaccatttacaactgtagcgtgaatgtggggaccatttttgactgctttctagatttctgaaccttgtgcttcaagaaatat 200  Q
    |||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31320591 ctagttttagtgaacttacatcatttacaaccgtggcgtgaatgtggggaccatttttgactgctttctagatttttgaaccttgtgcttcaagaaatat 31320690  T
Q  201 ttgcatacaaattttctgaaaatcatagggctcaccagtgaaacttggtggagggtttatgttaga-ccttcacccaaaaactgaattacaactacttaa 299  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| ||    
T  31320691 ctgcatacaaattttctgaaaatcatagtgctcaccagtgaaacttggtggacggtttatgttagacccttcacccaaaaactgaattacaattactcaa 31320790  T
Q  300 aagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaa 399  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||||| | |||||||| ||||||| |||||||||||||||| ||    
T  31320791 aagaaaataatacaaaatattctttaaacaatgaacaaattctctaaattaactcttatttctgttcgaatgcaaataaactaactaaaaacataacaaa 31320890  T
Q  400 aaacatcacatgatgctccatcttcagatatacatagttaagagatgatttgaatacga 458  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31320891 aaacatcatatgatgctccatcttcagatatacatagttaagagatgatttgaatacga 31320949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 413
Target Start/End: Original strand, 25965410 - 25965545
Alignment:
Q  278 aaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaata 377  Q
    ||||||||||||||| |||  || || || |||||||||||||  | |||| ||| |||| | |||||||||||||||||||||||||  | |  ||| |    
T  25965410 aaactgaattacaacgactcgaatgagaagaatacaaaatattgctcaaactatgtacaactcctttaaatgacctcttatttgtctttaagtacaaaga 25965509  T
Q  378 aattaactaaaaacataaccaaaaacatcacatgat 413  Q
    || ||||||||||||||||| ||||||||| |||||    
T  25965510 aaataactaaaaacataacctaaaacatcatatgat 25965545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 421
Target Start/End: Complemental strand, 26102137 - 26101993
Alignment:
Q  277 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 376  Q
    |||| ||||||||||| |||  || ||||||||||||||||  || | |||| ||  | ||||||| ||||||||||||||||||  ||| |||| |||     
T  26102137 aaaagtgaattacaacaactcgaatgaaaacaatacaaaatggtcctcaaaccattgataaattctctaaatgacctcttatttgcgttcaaatgcaaag 26102038  T
Q  377 aaattaactaaaaacataaccaaaaacatcacatgatgctccatc 421  Q
    ||| |||||||||||||  || |||| |||| |||||||||||||    
T  26102037 aaaataactaaaaacatcgcctaaaatatcatatgatgctccatc 26101993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 419
Target Start/End: Original strand, 27461216 - 27461358
Alignment:
Q  277 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 376  Q
    |||| ||||||| ||| |||| || |||||||||||||||| ||| | |||  ||| |||| | || ||||||||||||||||||| ||| |||  ||||    
T  27461216 aaaagtgaattataacaacttgaatgaaaacaatacaaaatgttcctcaaattatggacaattgctctaaatgacctcttatttgtattcaaatacaaat 27461315  T
Q  377 aaattaactaaaaacataaccaaaaacatcacatgatgctcca 419  Q
    ||| |||||||||||||| |  |||| |||| |||| ||||||    
T  27461316 aaaataactaaaaacatagcgtaaaatatcatatgacgctcca 27461358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 394
Target Start/End: Original strand, 15417033 - 15417125
Alignment:
Q  302 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 394  Q
    |||||||||| ||||| ||  | |||| |||||||| | |||||||||| ||||||||||||||| ||||  |||||| ||||||||||||||    
T  15417033 gaaaacaataaaaaatgtttctcaaaccatgaacaactcctttaaatgatctcttatttgtcttcaaatgcgaataaaataactaaaaacata 15417125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 414
Target Start/End: Complemental strand, 18795254 - 18795124
Alignment:
Q  284 aattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaa 383  Q
    |||||||| |||| ||| |||||| ||||||||| ||| | |||| ||  | |||| || |||||||||||||||||  |||| |||| ||| ||| | |    
T  18795254 aattacaattactcaaatgaaaacgatacaaaatgttcctcaaaccattgataaatcctctaaatgacctcttattttccttcaaatgcaaagaaaatca 18795155  T
Q  384 ctaaaaacataaccaaaaacatcacatgatg 414  Q
    ||| ||||||| || |||| |||||||||||    
T  18795154 ctagaaacatagcctaaaatatcacatgatg 18795124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 13807852 - 13807904
Alignment:
Q  342 tttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 394  Q
    |||| |||||||||||||||||||| ||||||||| || || |||||||||||    
T  13807852 tttacatgacctcttatttgtcttcaaatgtaaatgaaatatctaaaaacata 13807904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 402
Target Start/End: Complemental strand, 34381783 - 34381663
Alignment:
Q  282 tgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaatt 381  Q
    ||||||||||| |||  || |||||||||| || || ||||| |||| || ||||| | || ||||| || ||||||||| |||| |||| |||||||      
T  34381783 tgaattacaacgactcgaatgaaaacaatataatatgttcttcaaaccattaacaactcctctaaattacatcttatttgccttcaaatgcaaataaaac 34381684  T
Q  382 aactaaaaacataaccaaaaa 402  Q
     | ||||||||||||| ||||    
T  34381683 taataaaaacataacctaaaa 34381663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 421
Target Start/End: Complemental strand, 10867068 - 10866924
Alignment:
Q  277 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 376  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||| | |||| ||  |||| | || |||||||||||||||||| ||||||||  |||     
T  10867068 aaaactgaattacaacgactcaaatgaaaacaatacaaaatattcctcaaaccattgacaactactctaaatgacctcttatttgccttcgaattcaaag 10866969  T
Q  377 aaattaactaaaaacataaccaaaaacatcacatgatgctccatc 421  Q
    ||| ||||||||| |||| | ||||| |||| |||||| ||||||    
T  10866968 aaaataactaaaatcataccaaaaaatatcatatgatgttccatc 10866924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 13530165 - 13530284
Alignment:
Q  302 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 401  Q
    |||||||||||||||| ||| | |||| ||  |||  | || ||||||||||||||||||||||| | || ||| ||  |||||||||||||| || |||    
T  13530165 gaaaacaatacaaaatgttcctcaaaccatcgacatctcctctaaatgacctcttatttgtcttcaattgcaaagaatataactaaaaacatagcctaaa 13530264  T
Q  402 acatcacatgatgctccatc 421  Q
    |||||| |||||||||||||    
T  13530265 acatcatatgatgctccatc 13530284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 13619704 - 13619823
Alignment:
Q  302 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 401  Q
    |||||||||||||||| ||| | |||| ||  |||  | || ||||||||||||||||||||||| | || ||| ||  |||||||||||||| || |||    
T  13619704 gaaaacaatacaaaatgttcctcaaaccatcgacatctcctctaaatgacctcttatttgtcttcaattgcaaagaatataactaaaaacatagcctaaa 13619803  T
Q  402 acatcacatgatgctccatc 421  Q
    |||||| |||||||||||||    
T  13619804 acatcatatgatgctccatc 13619823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 420
Target Start/End: Original strand, 12774949 - 12775021
Alignment:
Q  348 tgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccat 420  Q
    ||||||||||||||||||| ||||  || ||| |||||||||||| | ||||||  |||| ||||||||||||    
T  12774949 tgacctcttatttgtcttcaaatgctaaaaaaataactaaaaacaaagccaaaagtatcatatgatgctccat 12775021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 41505639 - 41505687
Alignment:
Q  344 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaaca 392  Q
    ||||||||||||||||||||||| |||| ||| ||| ||||||||||||    
T  41505639 taaatgacctcttatttgtcttcaaatgcaaagaaaataactaaaaaca 41505687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 418
Target Start/End: Complemental strand, 24846316 - 24846200
Alignment:
Q  302 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 401  Q
    ||||| |||| ||||||||| | |||| ||| | |||| || ||||||||||||||||||||||| |||| ||| ||| |||||||||| ||| || |||    
T  24846316 gaaaaaaatataaaatattcctcaaaccatggaaaaatcctctaaatgacctcttatttgtcttcaaatgcaaagaaagtaactaaaaatatagcctaaa 24846217  T
Q  402 acatcacatgatgctcc 418  Q
    |||||| || |||||||    
T  24846216 acatcatatcatgctcc 24846200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 17459841 - 17459914
Alignment:
Q  60 gtatagaaccttttggtgaccatcttcatccaaagaggtttctagttttagtgaacttacaccatttacaactg 133  Q
    |||||||||||||| |||| ||||||||||| || | |||| | ||||| |||||||||| |||||||||||||    
T  17459841 gtatagaacctttttgtgatcatcttcatcccaacatgtttttggttttggtgaacttacgccatttacaactg 17459914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 421
Target Start/End: Complemental strand, 26070487 - 26070411
Alignment:
Q  344 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccatc 421  Q
    |||||||||||||||||| |||  |||| ||| ||| |||||||||||||| ||||||| |||| |||||| ||||||    
T  26070487 taaatgacctcttatttgccttaaaatgcaaagaaaataactaaaaacatagccaaaaa-atcatatgatgttccatc 26070411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 421
Target Start/End: Complemental strand, 24130703 - 24130591
Alignment:
Q  309 atacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcac 408  Q
    ||||||||| ||| | |||| ||  |||||| || ||| |||||||||||||| |||  |||| ||||| | |||||| ||||||| || |||| ||||     
T  24130703 atacaaaatgttcctcaaaccattgacaaatgctctaattgacctcttatttgccttaaaatgcaaatacaataactataaacatagcctaaaatatcat 24130604  T
Q  409 atgatgctccatc 421  Q
    || ||||||||||    
T  24130603 atcatgctccatc 24130591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 24410964 - 24411004
Alignment:
Q  277 aaaactgaattacaactacttaaaagaaaacaatacaaaat 317  Q
    |||||||||||||||| ||| ||| ||||||||||||||||    
T  24410964 aaaactgaattacaacgactcaaatgaaaacaatacaaaat 24411004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 421
Target Start/End: Complemental strand, 10576533 - 10576389
Alignment:
Q  277 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 376  Q
    |||| ||||||||||  |||  || |||||||||||||||| ||||| |||| ||| |||| |||| ||||||| |||||||||  |||| |||| |||     
T  10576533 aaaagtgaattacaatgactcgaatgaaaacaatacaaaatgttcttcaaaccatggacaacttctctaaatgatctcttattttccttcaaatggaaag 10576434  T
Q  377 aaattaactaaaaacataaccaaaaacatcacatgatgctccatc 421  Q
    ||| ||||||||||||||  | |||| |||| ||||| |||||||    
T  10576433 aaaataactaaaaacatagtctaaaatatcatatgatactccatc 10576389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 421
Target Start/End: Original strand, 17339915 - 17339992
Alignment:
Q  344 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccatc 421  Q
    |||||| ||||||||||| |||  |||||||||||| ||| |||||||||| || |||| |||| |||||||||||||    
T  17339915 taaatgtcctcttatttgcctttaaatgtaaataaaataattaaaaacatagcctaaaatatcatatgatgctccatc 17339992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 416
Target Start/End: Original strand, 16442363 - 16442432
Alignment:
Q  346 aatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgct 416  Q
    ||||||||||||||||||||| |||| ||| ||| |||||||| ||||| || ||||||||| ||||||||    
T  16442363 aatgacctcttatttgtcttcaaatgcaaagaaa-taactaaacacatagccgaaaacatcatatgatgct 16442432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 394
Target Start/End: Complemental strand, 24925885 - 24925768
Alignment:
Q  277 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 376  Q
    |||| ||||||||| | ||| ||| |||||||||||||||| ||  | |||| ||  |||| |  |||||||||| |||||||| ||||| |||  ||||    
T  24925885 aaaagtgaattacagcgactcaaatgaaaacaatacaaaatgttactcaaacgattgacaactcttttaaatgacttcttatttatcttcaaatacaaat 24925786  T
Q  377 aaattaactaaaaacata 394  Q
    ||| ||||||||||||||    
T  24925785 aaaataactaaaaacata 24925768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 402
Target Start/End: Original strand, 31859940 - 31860040
Alignment:
Q  302 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 401  Q
    ||||||| | |||||| ||| | |||||||  |||| |||| ||||| |||| |||||| ||||| |||| ||| ||| |||||||||||||| ||||||    
T  31859940 gaaaacagtgcaaaatgttcctcaaacaattgacaacttctctaaataaccttttatttttcttcaaatgcaaaaaaaataactaaaaacatagccaaaa 31860039  T
Q  402 a 402  Q
    |    
T  31860040 a 31860040  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 21167802 - 21167693
Alignment:
Q  284 aattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaa 383  Q
    ||||||||| |||  || |||||||||||||||| ||| |||||  ||| |||| | || |||||||| ||||||||  |||| |||| |||  || |||    
T  21167802 aattacaacaactcgaatgaaaacaatacaaaatgttccttaaaacatggacaactcctctaaatgacgtcttattttccttcaaatgcaaaacaaataa 21167703  T
Q  384 ctaaaaacat 393  Q
    ||||||||||    
T  21167702 ctaaaaacat 21167693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 407
Target Start/End: Complemental strand, 24047462 - 24047332
Alignment:
Q  277 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 376  Q
    |||| ||||||||||  |||  || |||||||||||||||| ||| |||||| ||  |||| |||| ||||| |||||||||||  |||| |||| ||||    
T  24047462 aaaagtgaattacaatgactcgaatgaaaacaatacaaaatgttccttaaaccattgacaatttctctaaataacctcttattttccttcaaatgcaaat 24047363  T
Q  377 aaattaactaaaaacataaccaaaaacatca 407  Q
    ||| |||||||||||||| || |||| ||||    
T  24047362 aaaataactaaaaacatagcctaaaatatca 24047332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 18117058 - 18116974
Alignment:
Q  282 tgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttc 366  Q
    ||||||||||  ||| ||| |||||||||||||||| ||| | |||| |||| ||||| || |||||||||||| ||||||||||    
T  18117058 tgaattacaatgactcaaatgaaaacaatacaaaatgttcgtcaaaccatgaccaaatcctctaaatgacctctcatttgtcttc 18116974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 401
Target Start/End: Original strand, 32276574 - 32276672
Alignment:
Q  303 aaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 401  Q
    |||||||| |||||| ||||| |||| ||  |||  | ||||||||||||||||||||  |||| |||| ||| ||| |||||||||||||| ||||||    
T  32276574 aaaacaatgcaaaatgttcttcaaaccattgacatctcctttaaatgacctcttattttccttcaaatgcaaagaaaataactaaaaacatatccaaaa 32276672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 418
Target Start/End: Complemental strand, 39730527 - 39730386
Alignment:
Q  277 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 376  Q
    |||| ||||||||||| |||| ||  ||||| ||| ||||| ||| |||||| |  ||||| |  | ||||||||| ||||||||||||| | | ||||     
T  39730527 aaaagtgaattacaacgacttgaataaaaactatagaaaatgttccttaaaccacaaacaactcatctaaatgaccccttatttgtcttcaattataaag 39730428  T
Q  377 aaattaactaaaaacataaccaaaaacatcacatgatgctcc 418  Q
    ||| |||||||||||||| || |||| || | ||||||||||    
T  39730427 aaaataactaaaaacatagcctaaaatattatatgatgctcc 39730386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 366
Target Start/End: Original strand, 15454575 - 15454654
Alignment:
Q  287 tacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttc 366  Q
    |||||| ||| ||||||||||||||||||||  || |||||  ||  |||| | ||||||||||||| ||||||||||||    
T  15454575 tacaacgactcaaaagaaaacaatacaaaatgatccttaaagcatagacaactcctttaaatgacctattatttgtcttc 15454654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 21505250 - 21505315
Alignment:
Q  353 tcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctcc 418  Q
    |||||||||||||| |||| ||| |||   |||||||||||| ||||||| |||| ||||||||||    
T  21505250 tcttatttgtcttcaaatgcaaagaaaaatactaaaaacatagccaaaaatatcatatgatgctcc 21505315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 31450012 - 31449920
Alignment:
Q  302 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 394  Q
    ||||| |||||||||||||| | |||| ||  |||| | || |||||||| | | | |||||||| |||| ||||||| ||||||||||||||    
T  31450012 gaaaaaaatacaaaatattcctaaaaccatctacaactcctctaaatgacttataaattgtcttcaaatgcaaataaaataactaaaaacata 31449920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 277 - 413
Target Start/End: Original strand, 21829167 - 21829303
Alignment:
Q  277 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 376  Q
    |||||||||||||||| ||| ||| ||||| |||||||||| ||| | |||| ||  |||| | || |||||||||||||||||  |||| |||| ||||    
T  21829167 aaaactgaattacaacgactcaaatgaaaataatacaaaatgttcctcaaaccattgacaactcctctaaatgacctcttattttccttcaaatgcaaat 21829266  T
Q  377 aaattaactaaaaacataaccaaaaacatcacatgat 413  Q
    ||| ||| |||||| |||  |||||| |||| |||||    
T  21829267 aaaataaataaaaatatagtcaaaaatatcatatgat 21829303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 353 - 426
Target Start/End: Original strand, 25919575 - 25919648
Alignment:
Q  353 tcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccatcttcag 426  Q
    |||||||||||||| |||  ||| ||||  |||||||||||||||| ||| |||| ||||||||||||| ||||    
T  25919575 tcttatttgtcttcaaattcaaagaaatgtactaaaaacataaccagaaatatcatatgatgctccatcatcag 25919648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 414
Target Start/End: Original strand, 12972421 - 12972556
Alignment:
Q  279 aactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataa 378  Q
    ||||||||||||||  ||| || |||| ||||||||||| |||  ||||  ||  |||| | || |||||||||||||| ||| |||| |||| ||| ||    
T  12972421 aactgaattacaacgtcttgaatgaaagcaatacaaaattttccgtaaaacattgacaactcctctaaatgacctcttagttgccttcaaatgcaaagaa 12972520  T
Q  379 attaactaaaaacataaccaaaaacatcacatgatg 414  Q
    | |||||||||||||| ||||||| |||| ||||||    
T  12972521 aataactaaaaacatagccaaaaatatcaaatgatg 12972556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 390
Target Start/End: Original strand, 9943184 - 9943297
Alignment:
Q  277 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 376  Q
    |||| |||||||||||  ||| || || ||| ||||||||||||| | |||| ||| |||| | || |||||||||||||||||||||||   ||||||     
T  9943184 aaaagtgaattacaacagcttgaatgataactatacaaaatattcctcaaacgatggacaactcctctaaatgacctcttatttgtcttcaggtgtaaaa 9943283  T
Q  377 aaattaactaaaaa 390  Q
    ||| ||||||||||    
T  9943284 aaaataactaaaaa 9943297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 26512879 - 26512929
Alignment:
Q  344 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 394  Q
    |||||||||||||||||| |||| |||| ||| ||| ||||||||||||||    
T  26512879 taaatgacctcttatttgccttcaaatgcaaacaaaataactaaaaacata 26512929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 26517995 - 26518045
Alignment:
Q  344 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 394  Q
    |||||||||||||||||| |||| |||| ||| ||| ||||||||||||||    
T  26517995 taaatgacctcttatttgccttcaaatgcaaacaaaataactaaaaacata 26518045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 418
Target Start/End: Original strand, 1755660 - 1755728
Alignment:
Q  350 acctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctcc 418  Q
    ||||||||||||||||| |||  ||| ||| |||||||||||||||||  | | |||| ||||||||||    
T  1755660 acctcttatttgtcttcaaattcaaagaaaataactaaaaacataacctgatatatcatatgatgctcc 1755728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 402
Target Start/End: Original strand, 19140075 - 19140134
Alignment:
Q  343 ttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaa 402  Q
    |||||||||||||| ||||||||| |||| ||| ||| ||||| |||||||| |||||||    
T  19140075 ttaaatgacctcttttttgtcttcaaatgcaaagaaaataacttaaaacatagccaaaaa 19140134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 402
Target Start/End: Original strand, 20739474 - 20739533
Alignment:
Q  343 ttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaa 402  Q
    |||||||||||||| ||||||||| |||| ||| ||| ||||| |||||||| |||||||    
T  20739474 ttaaatgacctcttttttgtcttcaaatgcaaagaaaataacttaaaacatagccaaaaa 20739533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 29544523 - 29544458
Alignment:
Q  353 tcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctcc 418  Q
    |||||||||||||| |||| ||| ||| | | |||||||||| ||||||| |||| ||||||||||    
T  29544523 tcttatttgtcttcaaatgcaaagaaaattaataaaaacatagccaaaaatatcatatgatgctcc 29544458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 22532774 - 22532822
Alignment:
Q  373 aaataaattaactaaaaacataaccaaaaacatcacatgatgctccatc 421  Q
    ||||||| |||||||||||||| || |||| |||| |||||||||||||    
T  22532774 aaataaaataactaaaaacatagcctaaaatatcatatgatgctccatc 22532822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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