View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_18 (Length: 474)
Name: NF11274_low_18
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 19930534 - 19930102
Alignment:
| Q |
18 |
catacaagtactcatggctttgtttgaccactgataatgtctccaccatactttcctccattcacggacctcgacgtctcaaggacaatccttttgttaa |
117 |
Q |
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| T |
19930534 |
catacaagtactcagggctttgtttgaccactaataatgtctccaccatactttcctccattcacggacctcgacgtctcaaggacaatccttttgttaa |
19930435 |
T |
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| Q |
118 |
aggatctgtatgatttctctcagttttcacatactcaagccagataataccaatttcagttaagtaacaatgtcttatatgtatatgtcttctcttgcta |
217 |
Q |
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| T |
19930434 |
aggatctgtatgatttctctcatttttcacatactcaagccagataataccaatttcagttaagtaacaatgtcttatatgaatatgtcttctctggcta |
19930335 |
T |
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| Q |
218 |
ctataagcactattattagtcacacaagctataaatgctagcaatagccaagtgcaaactagtatgcaatggattgttatgtatacaaaacgaaatgcaa |
317 |
Q |
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| T |
19930334 |
ctataagcactattattagtcacacaagctataaatactagcaatagacaatagcaaa-----gtgcaa---------actagtacaaaacagaatgcca |
19930249 |
T |
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| Q |
318 |
taa-ttaacaaataacaaacgcagaaaaaataccaaaccagcattcaattactaagctgaattacacctagaataaatcaaacaaaaattcaataaatga |
416 |
Q |
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| T |
19930248 |
taatttagtaaataataaacgcagaaaaaataccaaaccagcattcaattactaagttgaattacacctagaattaatcaaacaaaaactcaataaatga |
19930149 |
T |
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| Q |
417 |
aggttatatatcataagagtaaaatatctaagcaaggattagttcat |
463 |
Q |
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| T |
19930148 |
aggttatatatcataagagtaaaatatcttagcaaagattagttcat |
19930102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 47604150 - 47604216
Alignment:
| Q |
181 |
gtaacaatgtcttatatgtatatgt---cttctcttgctactataagcactattattagtcacacaa |
244 |
Q |
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| T |
47604150 |
gtaacactgtctcatacgtatatgtgttcttctcttgccactttaagcactattattagtcacacaa |
47604216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 465
Target Start/End: Original strand, 47609402 - 47609471
Alignment:
| Q |
393 |
atcaaacaaaaattcaataaatgaaggttatatatcataagagtaaaatatctaagcaaggattagttcatct |
465 |
Q |
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| T |
47609402 |
atcaaacaaaaattcaataaatg-aggttataaatcaca--agtaaaatatccgagcaaagcttagttcatct |
47609471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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