View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11274_low_19 (Length: 472)

Name: NF11274_low_19
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11274_low_19
NF11274_low_19
[»] chr3 (1 HSPs)
chr3 (281-466)||(16345939-16346123)
[»] chr2 (5 HSPs)
chr2 (107-229)||(44909499-44909621)
chr2 (356-466)||(23736197-23736305)
chr2 (279-375)||(15408636-15408732)
chr2 (18-82)||(44909614-44909688)
chr2 (283-319)||(29455796-29455832)
[»] chr1 (2 HSPs)
chr1 (358-466)||(22062817-22062923)
chr1 (281-396)||(6472739-6472856)
[»] chr6 (1 HSPs)
chr6 (281-373)||(20418319-20418410)
[»] scaffold0507 (1 HSPs)
scaffold0507 (280-360)||(10484-10562)
[»] scaffold0017 (1 HSPs)
scaffold0017 (332-375)||(467-511)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 281 - 466
Target Start/End: Complemental strand, 16346123 - 16345939
Alignment:
Q  281 tgatgagatcaaaagttcactaaatatatggaaggaaacctatnnnnnnnntgcatgaaaaatgaatattttattcatttaattccaagtcagcatcata 380  Q
    ||||||||||||||||||| |||  || |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16346123 tgatgagatcaaaagttcattaagcatgtggaaggaaacctataaaaaaa-tgcatgaaaaatgaatattttattcatttaattccaagtcagcatcata 16346025  T
Q  381 ttttctaatttaataacttcttctatgatctatattattctcacttctttggtattagctaattgaagattcattgcttaaatctc 466  Q
    |||||||||| ||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||    
T  16346024 ttttctaattgaataatttcttctatgagctatattattctcactgctttggtattaactaattgaagattcatggcttaaatctc 16345939  T

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Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 107 - 229
Target Start/End: Complemental strand, 44909621 - 44909499
Alignment:
Q  107 aataagattggaccaaattatcagctaggcacaaaacttaccaaatttatccagccattcattattcaatgagcatatagagactactgtaagtatactt 206  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44909621 aataagactggaccaaattatcagctaggcacaaaacttaccaaatttatccagccattcattattcaatgagcatatagagactactgtaggtatactt 44909522  T
Q  207 ctggctttatatgctactgctga 229  Q
    |||||||||||||||||||||||    
T  44909521 ctggctttatatgctactgctga 44909499  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 356 - 466
Target Start/End: Complemental strand, 23736305 - 23736197
Alignment:
Q  356 catttaattccaagtcagcatcatattttctaatttaataacttcttctatgatctatattattctcacttctttggtattagctaattgaagattcatt 455  Q
    ||||||||||||| |||||||||||||||| |||| ||||| ||||||||||| ||||  |||||||||| ||||||||||| ||||||||||||||||     
T  23736305 catttaattccaaatcagcatcatattttcaaattgaataatttcttctatgagctat--tattctcactgctttggtattaactaattgaagattcatg 23736208  T
Q  456 gcttaaatctc 466  Q
    |||||||||||    
T  23736207 gcttaaatctc 23736197  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 15408636 - 15408732
Alignment:
Q  279 agtgatgagatcaaaagttcactaaatatatggaaggaaacctatnnnnnnnntgcatgaaaaatgaatattttattca-tttaattccaagtcagca 375  Q
    ||||||||||||||||||||| |||  || |||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||    
T  15408636 agtgatgagatcaaaagttcattaagcatgtggaaggaaacctataaaaaaa-tgcatgaaaaatgaatattttattcattttaattccaagtcagca 15408732  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 44909688 - 44909614
Alignment:
Q  18 ttttttctgttttccttgctggaaatttgtac----------cactttgagtatagtgaaccattagaataagac 82  Q
    |||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||    
T  44909688 ttttttctgttttccttgctggaaatttgtatgatacagaatcactttgagtatagtgaaccattagaataagac 44909614  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 29455796 - 29455832
Alignment:
Q  283 atgagatcaaaagttcactaaatatatggaaggaaac 319  Q
    |||||||||| |||||||||||||| |||||||||||    
T  29455796 atgagatcaagagttcactaaatatgtggaaggaaac 29455832  T

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Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 358 - 466
Target Start/End: Complemental strand, 22062923 - 22062817
Alignment:
Q  358 tttaattccaagtcagcatcatattttctaatttaataacttcttctatgatctatattattctcacttctttggtattagctaattgaagattcattgc 457  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |  ||||||||||||| ||||| ||||| |||||||||||||||| ||    
T  22062923 tttaattccaaatcagcatcatattttctaattgaataatttcttctatgagc--tattattctcactgctttgatattaactaattgaagattcatggc 22062826  T
Q  458 ttaaatctc 466  Q
    |||||||||    
T  22062825 ttaaatctc 22062817  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 396
Target Start/End: Original strand, 6472739 - 6472856
Alignment:
Q  281 tgatgagatcaaaagttcactaaatatatggaaggaaacctatnnnnnnnntgcatgaaaaatgaatattttattca-tttaattccaagtcagcatcat 379  Q
    ||||||||||||||||||| |||| || |||||||||| ||||        |||||||||||||||||||||||| | ||||||| |||||||||||  |    
T  6472739 tgatgagatcaaaagttcattaaacatgtggaaggaaatctataaaaaaaatgcatgaaaaatgaatattttatttattttaatttcaagtcagcatgtt 6472838  T
Q  380 atttt-ctaatttaataa 396  Q
    ||||| ||||| ||||||    
T  6472839 attttgctaatataataa 6472856  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 373
Target Start/End: Complemental strand, 20418410 - 20418319
Alignment:
Q  281 tgatgagatcaaaagttcactaaatatatggaaggaaacctatnnnnnnnntgcatgaaaaatgaatattttattca-tttaattccaagtcag 373  Q
    |||||||||||||||||||||||  || |||||||||||||||        |||||||||||||||||||||||||| ||||||| ||||||||    
T  20418410 tgatgagatcaaaagttcactaagcatgtggaaggaaacctataaaaaa--tgcatgaaaaatgaatattttattcattttaatttcaagtcag 20418319  T

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Target: scaffold0507 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 10484 - 10562
Alignment:
Q  280 gtgatgagatcaaaagttcactaaatatatggaaggaaacctatnnnnnnnntgcatgaaaaatgaatattttattcattt 360  Q
    ||||||||||||||||||||||||  || |||||||||||||||        |||||||||||||||||||||||||||||    
T  10484 gtgatgagatcaaaagttcactaagcatgtggaaggaaacctat--aaaaaatgcatgaaaaatgaatattttattcattt 10562  T

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Target: scaffold0017 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 375
Target Start/End: Complemental strand, 511 - 467
Alignment:
Q  332 tgcatgaaaaatgaatattttattca-tttaattccaagtcagca 375  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  511 tgcatgaaaaatgaatattttattcattttaattccaagtcagca 467  T

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