View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_20 (Length: 460)
Name: NF11274_low_20
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 37810554 - 37810125
Alignment:
| Q |
19 |
attagcgttgtcgttgttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgtattaaatggtgtgatgtttcaaaagagatag |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
37810554 |
attagcgttgtcgtggttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgtattaaatggcgtgatgtttcaaaagagaaag |
37810455 |
T |
|
| Q |
119 |
aagataatgaagattcaggctatgcctataaatgtgttctggtgtggcaaggaaatgttgccaaatcgagcttcaataggttcagtgttcattactgcat |
218 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37810454 |
aagataatgaagattcaggcgatgccaataaatgtgttctggtgtggcaaggaagtgttgccaaatcgagcttcaataggttcagtgttcatgactgcat |
37810355 |
T |
|
| Q |
219 |
cactgaagcagctgctcgtaaagtttttgtggatgctggggttcctcattattgggaccaagctgtcaactatacagatgatgatgctgtttgaattgtc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37810354 |
cactgaagcagctgctcgtaaagtttttgtggatgctggggttcttcattattggtaccaagctgtcaactatacagatgatgatgctgtttgaattgtc |
37810255 |
T |
|
| Q |
319 |
ctctaatgtttttggtcaacattatttggatgcctatccagtcttttggtgagttaacagttatgcaattgcttttattggagnnnnnnnnnnaacaaaa |
418 |
Q |
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| T |
37810254 |
ctctaatgtttttggtcaacattatttggatgcctatccagtcttttggtgagttaacagttatgcaattgcttttagtggag--tttttttgaacaaaa |
37810157 |
T |
|
| Q |
419 |
taagaaatacaatagctgttggtgctcctttg |
450 |
Q |
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| T |
37810156 |
taagaaataccatagctgttggtgctcctttg |
37810125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 52352423 - 52351991
Alignment:
| Q |
19 |
attagcgttgtcgttgttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgtattaaatggtgtgatgtttcaaaagagatag |
118 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| | |||||||||||||||| || |
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| T |
52352423 |
attagcgttgttgtggttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgcatcaattggagcgatgtttcaaaagagaaag |
52352324 |
T |
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| Q |
119 |
aagataatgaagattcaggctatg-----cct----ataaatgtgttctggtgtggcaaggaaatgttgccaaatcgagcttcaataggttcagtgttca |
209 |
Q |
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| T |
52352323 |
aagatgatgaggattcagacgatgaaaagcctgcgaataaatgtgttctggtgtggcaaggaagtgttgccaaatcgagcttcaataggttcagtgttca |
52352224 |
T |
|
| Q |
210 |
ttactgcatcactgaagcagctgctcgtaaagtttttgtggatgctggggttcctcattattgggaccaagctgtcaactatacagatgatgatgctgtt |
309 |
Q |
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| T |
52352223 |
tgactgcatcactgaagcagctgctcgtaaagtgtttgtggatgctggggttcctcattattgggaccaagctgtcaactatacggaggacgatgctgtt |
52352124 |
T |
|
| Q |
310 |
tgaattgtcctctaatgtttttggtcaacattatttggatgcctatccagtcttttggtgagttaacagttatgcaattgcttttattggagnnnnnnnn |
409 |
Q |
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||||||||| |||| |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
52352123 |
tgaattgtcttctagtgtttttggttaacataattaggatgcctatccagtcttttggtgagttaacagttatgcaattgcttctagtggag---ttttt |
52352027 |
T |
|
| Q |
410 |
nnaacaaaataagaaatacaatagctgttggtgctc |
445 |
Q |
| |
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||||||||||||||| | |||||||||||||||| |
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| T |
52352026 |
tgaacaaaataagaaatgccatagctgttggtgctc |
52351991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 328 - 401
Target Start/End: Complemental strand, 17198673 - 17198600
Alignment:
| Q |
328 |
ttttggtcaacattatttggatgcctatccagtcttttggtgagttaacagttatgcaattgcttttattggag |
401 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
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| T |
17198673 |
ttttggtcaacattattaggatgcctatccagtcttttggtgagttaacagatatgcaattgcttctagtggag |
17198600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 17199266 - 17199198
Alignment:
| Q |
19 |
attagcgttgtcgttgttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgtat |
89 |
Q |
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|||||| |||| || ||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |
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| T |
17199266 |
attagcattgttgtggttgaaggtggaagcaagtcaattaagag--ataggaaacttatgcttagccgtat |
17199198 |
T |
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