View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11274_low_23 (Length: 432)

Name: NF11274_low_23
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11274_low_23
NF11274_low_23
[»] chr2 (12 HSPs)
chr2 (119-415)||(44410103-44410401)
chr2 (72-118)||(45139692-45139738)
chr2 (71-118)||(5276465-5276512)
chr2 (71-120)||(21471955-21472004)
chr2 (71-118)||(21471017-21471064)
chr2 (72-118)||(41042542-41042588)
chr2 (71-119)||(4479703-4479751)
chr2 (71-118)||(13134318-13134365)
chr2 (71-118)||(14573261-14573308)
chr2 (71-118)||(37547998-37548045)
chr2 (71-121)||(33433161-33433211)
chr2 (78-118)||(14574007-14574047)
[»] chr1 (22 HSPs)
chr1 (71-120)||(51988465-51988514)
chr1 (1-59)||(34716483-34716541)
chr1 (71-118)||(51987827-51987874)
chr1 (71-118)||(35616776-35616823)
chr1 (72-118)||(48869769-48869815)
chr1 (71-120)||(16270205-16270254)
chr1 (71-119)||(23440866-23440914)
chr1 (71-118)||(8560839-8560886)
chr1 (71-118)||(51974437-51974484)
chr1 (73-118)||(35615767-35615812)
chr1 (71-119)||(193849-193897)
chr1 (71-119)||(9948888-9948936)
chr1 (71-118)||(37874064-37874111)
chr1 (71-118)||(38930312-38930359)
chr1 (71-118)||(43737979-43738026)
chr1 (71-118)||(48972446-48972493)
chr1 (71-118)||(51975228-51975275)
chr1 (25-63)||(22784080-22784118)
chr1 (71-113)||(38931248-38931290)
chr1 (71-111)||(1012554-1012594)
chr1 (71-119)||(48870754-48870802)
chr1 (71-119)||(48971704-48971752)
[»] chr8 (18 HSPs)
chr8 (71-118)||(61454-61501)
chr8 (71-118)||(1365829-1365876)
chr8 (71-119)||(39254786-39254834)
chr8 (71-118)||(5034898-5034945)
chr8 (72-121)||(44752572-44752621)
chr8 (71-118)||(5035277-5035324)
chr8 (71-118)||(39255753-39255800)
chr8 (71-118)||(41859310-41859357)
chr8 (71-118)||(44751608-44751655)
chr8 (71-120)||(38023622-38023671)
chr8 (71-119)||(62241-62289)
chr8 (71-111)||(37639718-37639758)
chr8 (71-118)||(34992265-34992312)
chr8 (71-118)||(42346561-42346608)
chr8 (71-121)||(32536705-32536755)
chr8 (71-112)||(7424563-7424604)
chr8 (78-106)||(1366621-1366649)
chr8 (71-111)||(27918048-27918088)
[»] chr6 (20 HSPs)
chr6 (71-118)||(7532441-7532488)
chr6 (71-118)||(7531829-7531876)
chr6 (71-118)||(22579935-22579982)
chr6 (71-112)||(26227409-26227450)
chr6 (71-118)||(7193338-7193385)
chr6 (71-118)||(9574572-9574619)
chr6 (71-118)||(33480629-33480676)
chr6 (71-113)||(22582480-22582522)
chr6 (71-113)||(22587311-22587353)
chr6 (4-57)||(9453783-9453836)
chr6 (71-119)||(3543064-3543112)
chr6 (71-111)||(33018417-33018457)
chr6 (71-118)||(4827325-4827372)
chr6 (71-118)||(15083319-15083366)
chr6 (71-118)||(24125972-24126019)
chr6 (71-113)||(3542819-3542861)
chr6 (71-113)||(15082402-15082444)
chr6 (71-121)||(29997642-29997692)
chr6 (71-113)||(33479701-33479743)
chr6 (71-119)||(33018166-33018214)
[»] chr4 (25 HSPs)
chr4 (71-119)||(39523272-39523320)
chr4 (71-118)||(47198605-47198652)
chr4 (71-117)||(3847887-3847933)
chr4 (71-113)||(3848579-3848621)
chr4 (71-118)||(11417687-11417734)
chr4 (71-118)||(11417938-11417985)
chr4 (71-118)||(25371546-25371593)
chr4 (71-118)||(29651333-29651380)
chr4 (71-118)||(36865718-36865765)
chr4 (71-118)||(47199396-47199443)
chr4 (71-118)||(55159180-55159227)
chr4 (71-111)||(37275095-37275135)
chr4 (71-118)||(10424123-10424170)
chr4 (71-118)||(10425060-10425107)
chr4 (71-118)||(26611284-26611331)
chr4 (71-118)||(31836461-31836508)
chr4 (71-118)||(38694955-38695002)
chr4 (71-118)||(39522375-39522422)
chr4 (71-118)||(45235961-45236008)
chr4 (71-118)||(55160068-55160114)
chr4 (71-113)||(30478885-30478927)
chr4 (71-113)||(38143738-38143780)
chr4 (72-113)||(26610350-26610391)
chr4 (71-120)||(45230363-45230412)
chr4 (86-118)||(28683508-28683540)
[»] chr3 (18 HSPs)
chr3 (71-119)||(32489945-32489993)
chr3 (72-118)||(17226968-17227014)
chr3 (77-118)||(17227955-17227996)
chr3 (71-118)||(36750438-36750485)
chr3 (71-118)||(44687164-44687211)
chr3 (71-118)||(45242988-45243035)
chr3 (71-113)||(36750050-36750092)
chr3 (71-113)||(42145279-42145321)
chr3 (71-120)||(19132813-19132862)
chr3 (71-107)||(37104363-37104399)
chr3 (71-118)||(31556217-31556264)
chr3 (71-118)||(52492280-52492327)
chr3 (71-113)||(25329959-25330001)
chr3 (71-113)||(32490196-32490238)
chr3 (71-113)||(45242071-45242113)
chr3 (71-120)||(19132561-19132610)
chr3 (71-111)||(37105078-37105118)
chr3 (71-111)||(49757183-49757223)
[»] chr7 (14 HSPs)
chr7 (71-113)||(42455040-42455082)
chr7 (71-120)||(668177-668226)
chr7 (71-119)||(38779564-38779612)
chr7 (71-118)||(17145622-17145669)
chr7 (71-118)||(37468910-37468957)
chr7 (71-118)||(37469006-37469053)
chr7 (71-118)||(38072292-38072339)
chr7 (71-118)||(38778854-38778901)
chr7 (71-118)||(41194513-41194560)
chr7 (71-113)||(7677810-7677852)
chr7 (71-118)||(4261597-4261644)
chr7 (71-113)||(4261210-4261252)
chr7 (77-113)||(7677422-7677458)
chr7 (71-119)||(17145873-17145921)
[»] scaffold0311 (1 HSPs)
scaffold0311 (71-118)||(161-208)
[»] chr5 (17 HSPs)
chr5 (71-118)||(8204120-8204167)
chr5 (71-118)||(13654933-13654980)
chr5 (71-118)||(15184018-15184065)
chr5 (2-61)||(17766620-17766679)
chr5 (71-118)||(33002817-33002864)
chr5 (71-118)||(39950404-39950451)
chr5 (72-114)||(39167442-39167484)
chr5 (71-118)||(13655661-13655708)
chr5 (71-118)||(14553667-14553714)
chr5 (71-122)||(26688162-26688213)
chr5 (71-122)||(26957893-26957944)
chr5 (71-118)||(36626631-36626678)
chr5 (71-113)||(687349-687391)
chr5 (71-113)||(33001937-33001979)
chr5 (71-120)||(2319264-2319313)
chr5 (71-112)||(4607470-4607511)
chr5 (71-111)||(2458355-2458395)
[»] scaffold0136 (1 HSPs)
scaffold0136 (71-120)||(20646-20695)
[»] scaffold0041 (1 HSPs)
scaffold0041 (71-118)||(27221-27268)
[»] scaffold1037 (1 HSPs)
scaffold1037 (71-112)||(2900-2941)
[»] scaffold1031 (1 HSPs)
scaffold1031 (71-112)||(3019-3060)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 119 - 415
Target Start/End: Complemental strand, 44410401 - 44410103
Alignment:
Q  119 cttatacacacataaataatgtttctatgatggtctgtaagtaaattcaatatttttcattatgatgaatatgcatatgggtgggttgtttgaaattact 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44410401 cttagacacacataaataatgtttctatgatggtctgtaagtaaattcaatatttttcattatgatgaatatgcatatgggtgggttgtttgaaattact 44410302  T
Q  219 tgttaaatgttgaactcgtggaatttattgaatttcattttattgaaataagaaattttgaaattttgctttattagggtggtctttaacaattaatatt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44410301 tgttaaatgttgaactcgtggaatttattgaatttcattttattgaaataagaaattttgaaattttgctttattagggtggcctttaacaattaatatt 44410202  T
Q  319 gcttttatag--tagagttnnnnnnnnnnnnnnnnnnnnnnntataacaatgtgacattggaaaatcataatgcaaaagagtgctatatatataatatt 415  Q
    ||||||||||  |||||||                       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44410201 gcttttatagtatagagttaaaatcagaaaagaaaagaaaaatataacaatgtgacattggaaaatcataatgcaaaagagtgctatatatataatatt 44410103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 45139738 - 45139692
Alignment:
Q  72 tttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  45139738 tttcccatgatggaaaagaagtctcctttcccaaattaaatgccacc 45139692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 5276512 - 5276465
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  5276512 ctttcccatggtgggaaagaagtctcctttcccaagttaaatgccacc 5276465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 21471955 - 21472004
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccct 120  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  21471955 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcaccct 21472004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 21471064 - 21471017
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  21471064 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21471017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 41042588 - 41042542
Alignment:
Q  72 tttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||||||    
T  41042588 tttcccatggtgggaaagaagcctcctttctcaaattaaatgccacc 41042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 4479703 - 4479751
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    |||||||||||||  |||||| ||||||||||||||||||||| |||||    
T  4479703 ctttcccatggtgagaaagaactctcctttcccaaattaaatggcaccc 4479751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 13134365 - 13134318
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  13134365 ctttcctatggtgggaaagaactctcctttcccaaattaaatggcacc 13134318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 14573308 - 14573261
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  14573308 ctttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 14573261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 37548045 - 37547998
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||| ||| |||||| ||||||||||||||||||||| ||||    
T  37548045 ctttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 37547998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 33433161 - 33433211
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccctt 121  Q
    |||||||||||||| |||||| ||||||||| ||||||||| | |||||||    
T  33433161 ctttcccatggtgggaaagaactctcctttctcaaattaaacggcaccctt 33433211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 14574007 - 14574047
Alignment:
Q  78 atggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||||| |||||| ||||||||||||||||||||| ||||    
T  14574007 atggtgggaaagaactctcctttcccaaattaaatggcacc 14574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 51988465 - 51988514
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccct 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51988465 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccct 51988514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 34716541 - 34716483
Alignment:
Q  1 gatggatgatacggtgtggacagactatcataaaaactgtgttcctctttaatctgatc 59  Q
    ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||    
T  34716541 gatggatgatatggtgtggatagactatcataaaaaccgtgttcctctttaatctgatc 34716483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 51987874 - 51987827
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  51987874 ctttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 51987827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 35616776 - 35616823
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  35616776 ctttcccatggtgggaaagaagtctcctttcccaagttaaatgccacc 35616823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 48869815 - 48869769
Alignment:
Q  72 tttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||    
T  48869815 tttcccatggtggaaaagaagtctcctttcccaagttaaatgtcacc 48869769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 16270254 - 16270205
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccct 120  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  16270254 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcaccct 16270205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 23440866 - 23440914
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    |||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  23440866 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcaccc 23440914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 8560886 - 8560839
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  8560886 ctttcccatgatgggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 51974484 - 51974437
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  51974484 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 51974437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 35615812 - 35615767
Alignment:
Q  73 ttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||||    
T  35615812 ttcccatggtgggaaagaagtctccttttccaagttaaatgccacc 35615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 193897 - 193849
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    ||||| |||||||| |||||| ||||||||||||||||||||| |||||    
T  193897 ctttctcatggtgggaaagaactctcctttcccaaattaaatggcaccc 193849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 9948888 - 9948936
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    |||||||||||||| |||||| |||||||||| |||||||||| |||||    
T  9948888 ctttcccatggtgggaaagaactctcctttcctaaattaaatggcaccc 9948936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 37874111 - 37874064
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| ||||||||||| |||||||| ||||||| ||||    
T  37874111 ctttcccatggtgggaaagaagtctcatttcccaagttaaatgtcacc 37874064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 38930359 - 38930312
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||||||||||| ||||||| | ||||||||||||||||||| ||||    
T  38930359 ctttcccatggtgaaaaagaactttcctttcccaaattaaatgacacc 38930312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 43737979 - 43738026
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||| ||| |||||| ||||||||||||||||||||| ||||    
T  43737979 ctttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 43738026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 48972446 - 48972493
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||| ||||||||| |||||| ||||||||||||||||||||| ||||    
T  48972446 cttttccatggtgggaaagaactctcctttcccaaattaaatggcacc 48972493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 51975228 - 51975275
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||| ||||    
T  51975228 ctttcccatagtgaaaaagaactctcctttcccaaattaaatggcacc 51975275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 22784118 - 22784080
Alignment:
Q  25 ctatcataaaaactgtgttcctctttaatctgatcgttt 63  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  22784118 ctatcataaaatctgtattcctctttaatctgatcgttt 22784080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 38931248 - 38931290
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||||| |||||||| ||| |||||||||||||||||    
T  38931248 ctttcccatggtagaaaagaactcttctttcccaaattaaatg 38931290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 1012594 - 1012554
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaa 111  Q
    |||||||||||||| ||| || |||||||||||||||||||    
T  1012594 ctttcccatggtgggaaaaaaatctcctttcccaaattaaa 1012554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 48870754 - 48870802
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    |||||||||||||| ||| ||||||| |||||||| |||||| ||||||    
T  48870754 ctttcccatggtgggaaaaaagtctcatttcccaagttaaattccaccc 48870802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 48971752 - 48971704
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    ||||| ||| |||| |||||| ||||||||||||||||||||| |||||    
T  48971752 ctttctcattgtgggaaagaactctcctttcccaaattaaatgacaccc 48971704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 61501 - 61454
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  61501 ctttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 61454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 1365876 - 1365829
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  1365876 ctttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 39254834 - 39254786
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  39254834 ctttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccc 39254786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 5034945 - 5034898
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  5034945 ctttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 5034898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 44752572 - 44752621
Alignment:
Q  72 tttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccctt 121  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||||||||    
T  44752572 tttcctatggtgggaaagaagtctcctttcccaagttaaatgccaccctt 44752621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 5035277 - 5035324
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  5035277 ctttcctatggtggaaaagaactctcctttcccaaattaaatggcacc 5035324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 39255753 - 39255800
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||||||    
T  39255753 ctttcccatggtgggaaagaagtctcatttcccaagttaaatgccacc 39255800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 41859357 - 41859310
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  41859357 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 41859310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 44751655 - 44751608
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||||    
T  44751655 ctttcccatgatgggaaagaagtctcctttcccaagttaaatgccacc 44751608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 38023671 - 38023622
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccct 120  Q
    |||| ||||| |||||||||| ||||||||||||||||||||| ||||||    
T  38023671 cttttccatgatggaaaagaattctcctttcccaaattaaatgacaccct 38023622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 62241 - 62289
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    |||||| ||||||| |||||||||||||||| ||||||||||| |||||    
T  62241 ctttcctatggtgggaaagaagtctcctttctcaaattaaatgtcaccc 62289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 37639758 - 37639718
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaa 111  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  37639758 ctttcccatggtgggaaagaactctcctttcccaaattaaa 37639718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 34992265 - 34992312
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  34992265 ctttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 34992312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 42346561 - 42346608
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||| |||||||||||| | ||||||||||||||||| ||||    
T  42346561 ctttcccatgatggaaaagaagtttgctttcccaaattaaatggcacc 42346608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 32536755 - 32536705
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccctt 121  Q
    |||||||||||||| |||||| |||| ||||| |||||||||| |||||||    
T  32536755 ctttcccatggtgggaaagaactctcatttcctaaattaaatggcaccctt 32536705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 7424563 - 7424604
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaat 112  Q
    |||||||||||||||||| |||||| ||||| ||||||||||    
T  7424563 ctttcccatggtggaaaaaaagtcttctttctcaaattaaat 7424604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 106
Target Start/End: Original strand, 1366621 - 1366649
Alignment:
Q  78 atggtggaaaagaagtctcctttcccaaa 106  Q
    |||||||||||||||||||||||||||||    
T  1366621 atggtggaaaagaagtctcctttcccaaa 1366649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 27918048 - 27918088
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaa 111  Q
    |||||||||||||| ||| ||||||| ||||||||||||||    
T  27918048 ctttcccatggtgggaaaaaagtctcatttcccaaattaaa 27918088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 7532441 - 7532488
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7532441 ctttcccatggtgaaaaagaagtctcctttcccaaattaaatgccacc 7532488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 7531876 - 7531829
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||    
T  7531876 ctttcccatggtaggaaagaagtctcctttcccaaattaaatgccacc 7531829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 22579982 - 22579935
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  22579982 ctttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 22579935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 26227409 - 26227450
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaat 112  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  26227409 ctttcccatggtggaaaagaagtctcatttcccaaattaaat 26227450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 7193385 - 7193338
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  7193385 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 7193338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 9574572 - 9574619
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  9574572 ctttcctatggtgggaaagaagtctcctttcccaagttaaatgccacc 9574619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 33480629 - 33480676
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  33480629 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 22582480 - 22582522
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  22582480 ctttcccatggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 22587311 - 22587353
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  22587311 ctttcccatggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 9453783 - 9453836
Alignment:
Q  4 ggatgatacggtgtggacagactatcataaaaactgtgttcctctttaatctga 57  Q
    |||||||| ||||||||| |||||||||||||  ||| ||||||||||||||||    
T  9453783 ggatgatatggtgtggacggactatcataaaacatgtcttcctctttaatctga 9453836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 3543064 - 3543112
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    |||||||||||||| ||| || ||||||||||||||||||||| |||||    
T  3543064 ctttcccatggtgggaaaaaactctcctttcccaaattaaatggcaccc 3543112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 33018417 - 33018457
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaa 111  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  33018417 ctttcccatggtgggaaagaactctcctttcccaaattaaa 33018457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 4827325 - 4827372
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||  |||||||||||||||||||| ||||||||| ||||||    
T  4827325 ctttcccataatggaaaagaagtctcctttctcaaattaaaagccacc 4827372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 15083319 - 15083366
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||| |||||||| |||||| ||||||||||||||||||||| ||||    
T  15083319 ctttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 15083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 24126019 - 24125972
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| ||| || || |||||||||||||||||||||||    
T  24126019 ctttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 3542861 - 3542819
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||||||| ||| || |||||||||||||||||||||    
T  3542861 ctttcccatggtgggaaaaaactctcctttcccaaattaaatg 3542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 15082444 - 15082402
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||| |||||||||| |||| ||||||||||||||||    
T  15082444 ctttcccatgatggaaaagaactctcatttcccaaattaaatg 15082402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 29997692 - 29997642
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccctt 121  Q
    |||||||||||||||||| || |   |||||||||||||||||||||||||    
T  29997692 ctttcccatggtggaaaaaaactaatctttcccaaattaaatgccaccctt 29997642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 33479743 - 33479701
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||||||| ||| || |||||||||||||||||||||    
T  33479743 ctttcccatggtgggaaataactctcctttcccaaattaaatg 33479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 33018214 - 33018166
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    |||||| ||| ||| |||||| ||||||||||||||||||||| |||||    
T  33018214 ctttccaatgatgggaaagaactctcctttcccaaattaaatggcaccc 33018166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 39523272 - 39523320
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  39523272 ctttcccatggtggaaaagaactctcctttcccaaattaaatggcaccc 39523320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 47198652 - 47198605
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  47198652 ctttcccatggtgggaaagaagtctcctttcccaaattaaatgtcacc 47198605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 3847933 - 3847887
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccac 117  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  3847933 ctttcccatggtgggaaaaaagtctcctttcccaaattaaatgccac 3847887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 3848579 - 3848621
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  3848579 ctttcccatggtgggaaagaagtctcctttcccaaattaaatg 3848621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 11417734 - 11417687
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  11417734 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 11417687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 11417938 - 11417985
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  11417938 ctttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 11417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 25371546 - 25371593
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  25371546 ctttctcatggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 29651333 - 29651380
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  29651333 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 29651380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 36865718 - 36865765
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  36865718 ctttcccatggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 47199396 - 47199443
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  47199396 ctttcctatggtgggaaagaagtctcttttcccaaattaaatgccacc 47199443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 55159227 - 55159180
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||||    
T  55159227 ctttcccatggtaggaaagaagtctcctttcccaaattaaataccacc 55159180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 37275135 - 37275095
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaa 111  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  37275135 ctttctcatggtgggaaagaagtctcctttcccaaattaaa 37275095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 10424170 - 10424123
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  10424170 ctttcctatggtgggaaagaactctcctttcccaaattaaatggcacc 10424123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 10425060 - 10425107
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| |||||||||| |||||||||| ||||    
T  10425060 ctttcccatggtgggaaagaactctcctttcctaaattaaatggcacc 10425107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 26611284 - 26611331
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  26611284 ctttcccatggtgggaaaaaactctcctttcccaaattaaatgacacc 26611331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 31836461 - 31836508
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||| ||||||||||| ||||    
T  31836461 ctttcccatggtgggaaagaactctcctttctcaaattaaatggcacc 31836508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 38694955 - 38695002
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||| |||||||| |||||| ||||||||||||||||||||| ||||    
T  38694955 ctttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 38695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 39522422 - 39522375
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||||||||||| ||||||| | ||||||||||||||||||| ||||    
T  39522422 ctttcccatggtgaaaaagaactatcctttcccaaattaaatgacacc 39522375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 45235961 - 45236008
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| |||||||| |||||||||||| ||||    
T  45235961 ctttcccatggtgggaaagaactctccttttccaaattaaatggcacc 45236008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 55160068 - 55160114
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||    
T  55160068 ctttcccatggtgagaaa-aagtctcctttcccaaattaaatgccacc 55160114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 30478885 - 30478927
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||| |||||||||||| | |||||||||||||||||    
T  30478885 ctttcccatgatggaaaagaagtttgctttcccaaattaaatg 30478927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 38143738 - 38143780
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||||||| |||||| |||| ||||||||||||||||    
T  38143738 ctttcccatggtgggaaagaactctcatttcccaaattaaatg 38143780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 26610391 - 26610350
Alignment:
Q  72 tttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    ||||||||||||| |||||| |||| ||||||||||||||||    
T  26610391 tttcccatggtgggaaagaactctcatttcccaaattaaatg 26610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 45230412 - 45230363
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccct 120  Q
    |||||||||||||| |||||| |||| |||||| ||||||||| ||||||    
T  45230412 ctttcccatggtgggaaagaactctcttttcccgaattaaatggcaccct 45230363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 28683540 - 28683508
Alignment:
Q  86 aaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| ||||||||||||||||||    
T  28683540 aaagaagtctccttccccaaattaaatgccacc 28683508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 32489993 - 32489945
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  32489993 ctttcccatggtggaaaagaattctcctttcccaaattaaatggcaccc 32489945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 17227014 - 17226968
Alignment:
Q  72 tttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  17227014 tttcccatggtgggaaagaaatctcctttcccaaattaaatgccacc 17226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 17227955 - 17227996
Alignment:
Q  77 catggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  17227955 catggtgggaaagaagtctcctttcccaaattaaatgccacc 17227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 36750438 - 36750485
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  36750438 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 36750485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 44687164 - 44687211
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  44687164 cttttccatggtggaaaagaattctcctttcccaaattaaatggcacc 44687211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 45242988 - 45243035
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  45242988 ctttcccatggtggaaaagaactcttctttcccaaattaaatggcacc 45243035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 36750092 - 36750050
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  36750092 cttttccatggtggaaaagaactctcctttcccaaattaaatg 36750050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 42145279 - 42145321
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  42145279 ctttcctatggtggaaaaaaagtctcctttcccaaattaaatg 42145321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 19132813 - 19132862
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccct 120  Q
    |||||||||||||| |||||| | ||||||||||||||||||| ||||||    
T  19132813 ctttcccatggtgggaaagaactttcctttcccaaattaaatggcaccct 19132862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 37104399 - 37104363
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaat 107  Q
    |||||||||||||||||| ||||||||||||||||||    
T  37104399 ctttcccatggtggaaaaaaagtctcctttcccaaat 37104363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 31556217 - 31556264
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||| ||| |||||| ||||||||||||||||||||| ||||    
T  31556217 ctttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 31556264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 52492280 - 52492327
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||| |||||||||||||||| |||| |||||||||||||||| ||||    
T  52492280 cttttccatggtggaaaagaactctcatttcccaaattaaatgacacc 52492327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 25329959 - 25330001
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||| |||||||||||| | |||||||||||||||||    
T  25329959 ctttcccatgatggaaaagaagtttgctttcccaaattaaatg 25330001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 32490196 - 32490238
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||| ||||||||| |||||| |||||||||||||||||||||    
T  32490196 cttttccatggtgggaaagaactctcctttcccaaattaaatg 32490238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 45242113 - 45242071
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||| |||||||||| |||| ||||||||||||||||    
T  45242113 ctttcccatgatggaaaagaactctcatttcccaaattaaatg 45242071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 19132610 - 19132561
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccct 120  Q
    ||||||||| || | |||||| ||||||||||||||||||||| ||||||    
T  19132610 ctttcccatagtaggaaagaactctcctttcccaaattaaatggcaccct 19132561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 37105078 - 37105118
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaa 111  Q
    |||||||||||||| ||| ||||||| ||||||||||||||    
T  37105078 ctttcccatggtgggaaaaaagtctcgtttcccaaattaaa 37105118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 49757183 - 49757223
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaa 111  Q
    |||||||||||| | ||| ||||||||||||||||||||||    
T  49757183 ctttcccatggtaggaaaaaagtctcctttcccaaattaaa 49757223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 42455082 - 42455040
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  42455082 ctttcccatggtagaaaagaagtctcctttcccaaattaaatg 42455040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 668226 - 668177
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccct 120  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  668226 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcaccct 668177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 38779564 - 38779612
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    |||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  38779564 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcaccc 38779612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 17145669 - 17145622
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  17145669 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 17145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 37468957 - 37468910
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  37468957 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37468910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 37469006 - 37469053
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  37469006 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 38072292 - 38072339
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    ||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  38072292 ctttcccatggtggaaaagaactctcatttcccaaattaaatggcacc 38072339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 38778901 - 38778854
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  38778901 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38778854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 41194560 - 41194513
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  41194560 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 41194513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 7677810 - 7677852
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  7677810 ctttcccatggtgggaaagaactctcctttcccaaattaaatg 7677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 4261597 - 4261644
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| |||||||||| |||||||||| ||||    
T  4261597 ctttcccatggtgggaaagaactctcctttcctaaattaaatggcacc 4261644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 4261252 - 4261210
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||||||| |||||||| |||||||||| ||||||||||    
T  4261252 ctttcccatggtagaaaagaactctcctttcctaaattaaatg 4261210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 7677458 - 7677422
Alignment:
Q  77 catggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||||||| |||||| |||||||||||||||||||||    
T  7677458 catggtgggaaagaattctcctttcccaaattaaatg 7677422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 17145873 - 17145921
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccc 119  Q
    ||||||||| ||  ||||||| ||||||||||||||||||||| |||||    
T  17145873 ctttcccatagtaaaaaagaactctcctttcccaaattaaatggcaccc 17145921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 161 - 208
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  161 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 8204167 - 8204120
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  8204167 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 8204120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 13654980 - 13654933
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  13654980 ctttcctatggtgggaaagaagtctcctttcccaaattaaatgtcacc 13654933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 15184018 - 15184065
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  15184018 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 15184065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 17766679 - 17766620
Alignment:
Q  2 atggatgatacggtgtggacagactatcataaaaactgtgttcctctttaatctgatcgt 61  Q
    |||||||||| |||||||  ||||||||||||||  |||||||||||| |||||||||||    
T  17766679 atggatgatatggtgtgggtagactatcataaaatatgtgttcctcttgaatctgatcgt 17766620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 33002817 - 33002864
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  33002817 ctttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 33002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 39950451 - 39950404
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  39950451 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 39950404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 39167442 - 39167484
Alignment:
Q  72 tttcccatggtggaaaagaagtctcctttcccaaattaaatgc 114  Q
    ||||||||| ||| |||||||||||||||||||||||||||||    
T  39167442 tttcccatgatgggaaagaagtctcctttcccaaattaaatgc 39167484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 13655661 - 13655708
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||  ||| ||||||||||| |||||||||||||||||||||    
T  13655661 ctttcccataatgggaaagaagtctcttttcccaaattaaatgccacc 13655708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 14553714 - 14553667
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||| |||||||||||| | ||||||||||||||||| ||||    
T  14553714 ctttcccatgatggaaaagaagtttgctttcccaaattaaatggcacc 14553667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 26688213 - 26688162
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccctta 122  Q
    |||||||||| ||| |||||||| | ||||||||||||||||| ||||||||    
T  26688213 ctttcccatgatgggaaagaagtttgctttcccaaattaaatggcaccctta 26688162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 26957944 - 26957893
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccctta 122  Q
    |||||||||| ||| |||||||| | ||||||||||||||||| ||||||||    
T  26957944 ctttcccatgatgggaaagaagtttgctttcccaaattaaatggcaccctta 26957893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 36626631 - 36626678
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||||||| |||||| |||| |||||||||||||||| ||||    
T  36626631 ctttcccatggtgggaaagaactctcatttcccaaattaaatggcacc 36626678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 687349 - 687391
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||| |||| ||||||||||| |||||||||||||||||||||    
T  687349 cttttccatagtggaaaagaactctcctttcccaaattaaatg 687391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 33001979 - 33001937
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatg 113  Q
    |||| ||||||||| |||||| |||||||||||||||||||||    
T  33001979 cttttccatggtgggaaagaactctcctttcccaaattaaatg 33001937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 2319313 - 2319264
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccct 120  Q
    |||||||||||||| ||| || |  |||||||||||||||||||||||||    
T  2319313 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgccaccct 2319264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 4607511 - 4607470
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaat 112  Q
    |||||||||||||| ||| |||||| ||||||||||||||||    
T  4607511 ctttcccatggtgggaaaaaagtctactttcccaaattaaat 4607470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 2458355 - 2458395
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaa 111  Q
    |||| ||||||||||||| ||||||| ||||||||||||||    
T  2458355 cttttccatggtggaaaaaaagtctcatttcccaaattaaa 2458395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 20695 - 20646
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccct 120  Q
    |||||||||||||||||| ||||  ||||| |||||||||||||||||||    
T  20695 ctttcccatggtggaaaaaaagtagccttttccaaattaaatgccaccct 20646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 27268 - 27221
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 118  Q
    |||||||||| ||| |||||| ||||||||||||||||||||| ||||    
T  27268 ctttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 27221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 2900 - 2941
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaat 112  Q
    |||||||||||| |||||||||| |||||||||| |||||||    
T  2900 ctttcccatggtagaaaagaagtatcctttcccagattaaat 2941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 3019 - 3060
Alignment:
Q  71 ctttcccatggtggaaaagaagtctcctttcccaaattaaat 112  Q
    |||||||||||| |||||||||| |||||||||| |||||||    
T  3019 ctttcccatggtagaaaagaagtatcctttcccagattaaat 3060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University