View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_24 (Length: 416)
Name: NF11274_low_24
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 7175076 - 7175454
Alignment:
| Q |
18 |
cttcttggtgaaatttgaatctgagatgagagatttccaggatttggagacagatttaaactgtgcgagggatttgactggaagcctgtagagaatgtct |
117 |
Q |
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| T |
7175076 |
cttcttggtgaaatttgaatctgagatgagagatttccaggatttggagacagatttaaactgtgcgagggatttgactggaagcctgtagagaatgtct |
7175175 |
T |
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| Q |
118 |
tcaacaagatcgaatggaagagtgggattcgagcgccgactcttagtgacggttgttctcgatgtcatttgtgagcgtggcggcgca-----ggcacatg |
212 |
Q |
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| T |
7175176 |
tcaacaagatcgaatggaagagtgggattcgagcgccgactctttgtgacggttgttctcgataccatttgtgagcgtggcggcgcaggcctggcacatg |
7175275 |
T |
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| Q |
213 |
gatgaatcaacgaatgaaatccaagtttatgaatcacagactgtttttggcgagttcgcctttgtttaattcttcttcatcaccgccgcttgcatcttct |
312 |
Q |
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| T |
7175276 |
gatgaatcaacgaatgaaatcgaagtttatgaatcacaga-----------gagttcgcctttgtttaattctacttcatcaccgccgcttgcatcttct |
7175364 |
T |
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| Q |
313 |
attgatttgaaaaataagtgtgctgtgagtgacctcgataaatagagactaatgaaatcaaaaaactactttaccttctccctctcactt |
402 |
Q |
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| T |
7175365 |
attgatttgaaaaataagtgtgctgtgattgacctcgataaatagagacgaatgaaatcaaaaaactactttaccttctccctctcactt |
7175454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 7161485 - 7161571
Alignment:
| Q |
19 |
ttcttggtgaaatttgaatctgagatgagagatttccaggatttggagacagatttaaactgtgcgagggatttgactggaagcctg |
105 |
Q |
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| T |
7161485 |
ttcttggcgaaatttgaatctgaaataagatatttccaggatttgcagaccgatttgagttgcatgagggatttgactggaagcctg |
7161571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 24722650 - 24722546
Alignment:
| Q |
40 |
gagatgagagatttccaggatttggagacagatttaaactgtgcgagggatttgactggaagcctgtagagaatgtcttcaacaagatcgaatggaagag |
139 |
Q |
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| T |
24722650 |
gagatgaatgatttccaggacttgcagacacatttgaattgcatgagggacttgaccggaagcctatagagaatttctaacacaagatcgaatggaagag |
24722551 |
T |
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| Q |
140 |
tggga |
144 |
Q |
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| T |
24722550 |
tggga |
24722546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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