View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_26 (Length: 413)
Name: NF11274_low_26
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 4 - 399
Target Start/End: Complemental strand, 43921395 - 43921000
Alignment:
| Q |
4 |
atcaagtagcattttgaaaaggacacatacatagtcatagaatgcatgagtgaaattttgaagccnnnnnnnccttttatgttcagaagtatagcaacat |
103 |
Q |
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| T |
43921395 |
atcaagtagcattttgaaaaggacacatacatagtcatagaatgcatgagtgaaattttgaagcctttttttccttttatgttcagaagtatagcaacat |
43921296 |
T |
|
| Q |
104 |
attaacttgcaatttatttgcactaccaaatccaatcaatattgcttatttactagaatgctctatacatttgactaactaccagtcaacgctagtaaaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43921295 |
attaacttgcaatttatttgcactaccaaatccaatcaatattgcttatttactagaatgctctatacatttgactaactaccagtcaatgctagtaaaa |
43921196 |
T |
|
| Q |
204 |
actactagtctcttaccttattttctaccaaattcccaatgataaatgcaactagtagtttctttgatctacacagtaagtactctctttcattttacaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43921195 |
actactagtctcttaccttattttctaccaaattcccaatgataaatgcaactagtagtttctttgatctacacagtaagtactctctttcattttacaa |
43921096 |
T |
|
| Q |
304 |
atttcatcattttctgcaacttctacaaaatatttttcaacttattagtatgtcaagaccggggaataagatcattcaagccaagctggtaggtat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43921095 |
atttcatcattttctgcaacttctacaaaatattttgcaacttattagtatgtcaagaccggggaataagatcattcaagccaagctggtaggtat |
43921000 |
T |
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