View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_28 (Length: 388)
Name: NF11274_low_28
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 39287947 - 39287733
Alignment:
| Q |
1 |
atgatagtaaggtgtcggtgatacataacatatatcactaatggattggacacattattaaagataagtagcagatctaatagattgacggaatacgtgt |
100 |
Q |
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| T |
39287947 |
atgatagtaaggtgtcggtgatacataacatatatcactaatggattggacacattattaaagataagtagcagatctaatagattgacggaatacgtgt |
39287848 |
T |
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| Q |
101 |
gagctagtaaatcaaaacaacaagataaaaaacgaatggataaaattttgcacatgaaatagcagaggaaaatacaagttaagcgatcaatcaagaaacg |
200 |
Q |
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| T |
39287847 |
gagctagtaaatcaaaacaacaagataaaaaacgaatgaataaaattttgcacatgaaatagcagaggaaaatacaagttaagcgatcaatcaagaaacg |
39287748 |
T |
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| Q |
201 |
gtcacgtagatccat |
215 |
Q |
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| T |
39287747 |
gtcacgtagatccat |
39287733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 39287690 - 39287614
Alignment:
| Q |
294 |
gaacgaaaatagaaagaaattgataacacgttacctattatgaaagaagcagatctgagagaaaatagttatctctg |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39287690 |
gaacgaaaatagaaagaaattgataacacgttacctattatgaaagaagcagatctgagagagaatagttatctctg |
39287614 |
T |
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