View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11274_low_30 (Length: 387)

Name: NF11274_low_30
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11274_low_30
NF11274_low_30
[»] chr8 (6 HSPs)
chr8 (15-387)||(27066947-27067319)
chr8 (17-253)||(27080633-27080869)
chr8 (15-209)||(27053758-27053952)
chr8 (299-387)||(22652016-22652106)
chr8 (336-387)||(21465452-21465503)
chr8 (342-387)||(2572030-2572075)
[»] chr5 (2 HSPs)
chr5 (333-387)||(19579741-19579795)
chr5 (333-387)||(21542070-21542124)
[»] chr1 (1 HSPs)
chr1 (342-387)||(21032246-21032291)
[»] chr3 (4 HSPs)
chr3 (330-387)||(15796256-15796313)
chr3 (293-387)||(34185046-34185142)
chr3 (343-387)||(14216932-14216976)
chr3 (343-387)||(14223061-14223105)


Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 27066947 - 27067319
Alignment:
Q  15 agagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtga 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27066947 agagatgggcggcggagcagaattccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtga 27067046  T
Q  115 ggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttggttc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067047 ggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttggttc 27067146  T
Q  215 ttctctttttcatgatttatagctaaaccaacctgcattattcataaacataactaattagaataataataaaagagacatcaactatgaagcacataca 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||  |||    
T  27067147 ttctctttttcatgatttatagctaaaccaacctgcattattcataaacataaacaattagaataataataaaagagacatcaactatgaagcacggaca 27067246  T
Q  315 ctattcagattagacgttccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaatt 387  Q
    ||  || ||||||||||||||||||| |||||||||||||||||||||  ||||| ||| |||||||||||||    
T  27067247 ctcctcggattagacgttccggtgttcgacacatgtcgtgtccgacaccgacacgacactgacacttgtaatt 27067319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 27080633 - 27080869
Alignment:
Q  17 agatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtgagg 116  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||||| ||||||||||| |  || | |||||  |||||||||||||||||||| |    
T  27080633 agatgggcagccgagcagaactccggcaactttgtggagagtgtgttggctgccgcgtgtttcgcaaaagccgcggtctcggtggcgctgagtggtgatg 27080732  T
Q  117 ccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttggttctt 216  Q
    |||||  ||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||| | |||||||||||||||||| ||    
T  27080733 ccttattgaggatgaatgttggttttggtaacttgtttttgatcactctgtcccaataacgaattgcaaaagctttcgcagtgaatgggttttggttttt 27080832  T
Q  217 ctctttttcatgatttatagctaaaccaacctgcatt 253  Q
     |||  | ||||||  |  ||||||||||||||||||    
T  27080833 gtctcctgcatgatccactgctaaaccaacctgcatt 27080869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 27053758 - 27053952
Alignment:
Q  15 agagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtga 114  Q
    ||||||| ||||| |||||||| ||||||| ||||||||| | |||||||||||| ||||| |||   || |  || || ||||||||||| ||||||||    
T  27053758 agagatgtgcggcagagcagaattccggcaactttgtggataatgtgttggcggcagcgtgcttttcaaaagctgcagcatcggtggcgctaagtggtga 27053857  T
Q  115 ggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggtttt 209  Q
     ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||| |||| || ||||||||||||| |||||    
T  27053858 cgccttggagaggatgaaggatggttttggcaagttgtttttgatcactctgtcccaataccgaattgcatacgcctttggagtgaatgagtttt 27053952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 387
Target Start/End: Complemental strand, 22652106 - 22652016
Alignment:
Q  299 ctatgaagcacatacactattcagattagacgtt--ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaatt 387  Q
    |||||||||||  |||||  || ||||||||||   |||||||  |||||||||||||||||||||  ||||| |||||||||||||||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaatt 22652016  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 21465503 - 21465452
Alignment:
Q  336 gtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaatt 387  Q
    ||||| ||||| |||||||||||||||| ||||| |||| ||||||||||||    
T  21465503 gtgttggacacgtgtcgtgtccgacactgacacgacaccaacacttgtaatt 21465452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 387
Target Start/End: Original strand, 2572030 - 2572075
Alignment:
Q  342 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaatt 387  Q
    ||||| |||||||||||||||  ||||| |||||||||||||||||    
T  2572030 gacacgtgtcgtgtccgacacagacacgacaccgacacttgtaatt 2572075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 19579795 - 19579741
Alignment:
Q  333 ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaatt 387  Q
    |||||||| |||| ||||||||||||||||| ||||| |||||||||||||||||    
T  19579795 ccggtgttagacatatgtcgtgtccgacactgacacgacaccgacacttgtaatt 19579741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 21542124 - 21542070
Alignment:
Q  333 ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaatt 387  Q
    |||||||  ||||| |||||||||||||||  ||||| |||||||||||||||||    
T  21542124 ccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaatt 21542070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 387
Target Start/End: Complemental strand, 21032291 - 21032246
Alignment:
Q  342 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaatt 387  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||    
T  21032291 gacacatgtcgtgtccgacacccacacgacaccgacatttgtaatt 21032246  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 15796256 - 15796313
Alignment:
Q  330 gttccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaatt 387  Q
    ||||||||||| ||||| ||| |||||||||||  ||||| |||||||| ||||||||    
T  15796256 gttccggtgttggacacgtgttgtgtccgacacctacacgacaccgacaattgtaatt 15796313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 387
Target Start/End: Original strand, 34185046 - 34185142
Alignment:
Q  293 catcaactatgaagcacatacactattcagattagacgtt--ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaatt 387  Q
    |||||||||||||||||  |||||  || |||||| |||   |||||||  |||||||||| |||||||||   ||||| |||||||||||||||||    
T  34185046 catcaactatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtcttgtccgacatggacacgacaccgacacttgtaatt 34185142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 14216976 - 14216932
Alignment:
Q  343 acacatgtcgtgtccgacactcacacggcaccgacacttgtaatt 387  Q
    |||| |||||||||||||||| ||||| ||| |||||||||||||    
T  14216976 acacgtgtcgtgtccgacactaacacgacacggacacttgtaatt 14216932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 14223105 - 14223061
Alignment:
Q  343 acacatgtcgtgtccgacactcacacggcaccgacacttgtaatt 387  Q
    |||| |||||||||||||||| ||||| ||| |||||||||||||    
T  14223105 acacgtgtcgtgtccgacactaacacgacacggacacttgtaatt 14223061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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