View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_32 (Length: 379)
Name: NF11274_low_32
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_32 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 379
Target Start/End: Complemental strand, 27744936 - 27744568
Alignment:
| Q |
7 |
aaaacatttttgacaaaatcaaatgtttcaactcttagcatttaaattnnnnnnnnnnnnnn-ttattatacgtttatgcacaccttcacatagttccag |
105 |
Q |
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| T |
27744936 |
aaaacatttttgacaaaatcaaatgtttcaactcttagcatttaaattaaaaaaaagaaaaaattattatacgtttatgcacaccttcacatagttccag |
27744837 |
T |
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| Q |
106 |
tccatgttgacaacagcaagcctataagtatctttctcaatcaccgataccttgtcttcctgatcctatttaataacaacaaaaacactaataacgaagg |
205 |
Q |
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| T |
27744836 |
tccatgttgacaacagcaagcctataagtatctttatcaatcaccgatacctcgtcttcctgatcctatttaataacaacaaaaacactaataacgaagg |
27744737 |
T |
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| Q |
206 |
aagnnnnnnnnnnnnttaaacatgtgcttggtccctgcaaatatctcagtttgggcataaaagtacctgcatatcaagtgtgtcagtatcttcatctgtg |
305 |
Q |
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| T |
27744736 |
aa-----aaaaaaatttaaacatgtgcttggtccctgcaagtatctcagtttgggcataaaagtacctgcatatcaagtgtgtcagtatcttcatctgtg |
27744642 |
T |
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| Q |
306 |
tatgtatcttcttcttcgtctgtagtagaatttgattcattctctgctgctttatcattatcatccatcaattc |
379 |
Q |
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| T |
27744641 |
tatgtatcttcttcttcgtctgtagtagaatttgattcattctctgctgctttatcattatcatccatcaattc |
27744568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 49513660 - 49513556
Alignment:
| Q |
85 |
cacaccttcacatagttccagtccatgttgacaacagcaagcctataagtatctttctcaatcaccgataccttgtcttcctgatcctatttaataacaa |
184 |
Q |
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| T |
49513660 |
cacaccttcacatagttccagtccatgtagacaacagccagcctatgagtatctttctcaatcactgatacc---tcttcgtgttcctattttataacaa |
49513564 |
T |
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| Q |
185 |
caaaaaca |
192 |
Q |
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||| |||| |
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| T |
49513563 |
caacaaca |
49513556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 49513466 - 49513407
Alignment:
| Q |
318 |
tcttcgtctgtagtagaatttgattcattctctgctgctttatcattatcatccatcaat |
377 |
Q |
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||||| ||||||||||||||||||||||||||| || ||||| ||| || ||||||||| |
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| T |
49513466 |
tcttcatctgtagtagaatttgattcattctctactcctttaacatgctcctccatcaat |
49513407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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