View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_33 (Length: 375)
Name: NF11274_low_33
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 28046699 - 28046338
Alignment:
| Q |
1 |
tttttgccatggattcgaatcttaacttaaggggtaaatcataaatccttgcccaaaatgacattgaattcatttctatttcagaaggttgttcagtacc |
100 |
Q |
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| T |
28046699 |
tttttgccatggattcgaatcttaacttaaggggtaaatcataaatccttgcccaaaatgacattgaattcatttctatttcagaaggttgttcagtacc |
28046600 |
T |
|
| Q |
101 |
tgtaaccctcttcagtaccagaatatttctatcaaagctccaaggtccattttttatcacattttccatatcacgtttattacaaaaccggaaaaggtaa |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28046599 |
tgtaaccctcttcaataccagaatatttctatcaaagctccaaggtccattttttatcacattttccagatcacgtttattacaaaaccggaaaaggtaa |
28046500 |
T |
|
| Q |
201 |
agattcttaccaagttcttgtgtttcaactggatttttgagcctccagaattccacaatcgtttgcttaaaagctctaacgttgtaagcattatcagtcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28046499 |
agattcttaccaagttcttgtgtttcaactggatttttgagcctccagaattccacaatcgtttgcttaaaagctctaacattgtaagcattatcagtcc |
28046400 |
T |
|
| Q |
301 |
aaagcttccctagcagagatctgccatatacctcctcttcaattggttcttcatcttcctct |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28046399 |
aaagcttccctagcagagatctgccatatacctcctcttcaattggttcttcatcttcctct |
28046338 |
T |
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