View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11274_low_34 (Length: 374)

Name: NF11274_low_34
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11274_low_34
NF11274_low_34
[»] chr8 (6 HSPs)
chr8 (17-324)||(27067412-27067718)
chr8 (326-363)||(27067307-27067344)
chr8 (321-367)||(18170485-18170533)
chr8 (321-367)||(18634053-18634101)
chr8 (325-367)||(24669445-24669489)
chr8 (325-367)||(40332203-40332247)
[»] chr7 (3 HSPs)
chr7 (318-367)||(27945046-27945097)
chr7 (320-367)||(21880159-21880208)
chr7 (320-367)||(28155577-28155626)
[»] scaffold0018 (1 HSPs)
scaffold0018 (325-369)||(192250-192296)
[»] scaffold0049 (1 HSPs)
scaffold0049 (320-367)||(63780-63829)
[»] scaffold0004 (1 HSPs)
scaffold0004 (320-363)||(92814-92859)
[»] chr6 (1 HSPs)
chr6 (320-367)||(7977833-7977882)
[»] chr4 (1 HSPs)
chr4 (320-367)||(847958-848007)
[»] chr1 (3 HSPs)
chr1 (320-367)||(41877473-41877522)
chr1 (325-367)||(6612174-6612218)
chr1 (320-365)||(31015050-31015097)
[»] chr5 (1 HSPs)
chr5 (325-363)||(6326304-6326344)
[»] chr3 (1 HSPs)
chr3 (327-365)||(4990972-4991012)
[»] scaffold0044 (1 HSPs)
scaffold0044 (325-370)||(53192-53239)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 27067718 - 27067412
Alignment:
Q  17 acaaactactttaattctataaattattggttacagcaacactgaaactcactacactttccaccttatcccttccttcactctttctcaatgttatctc 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067718 acaaactactttaattctataaattattgcttacagcaacactgaaactcactacactttccaccttatcccttccttcactctttctcaatgttatctc 27067619  T
Q  117 tatagaaaccattgaagaagtataaacataaatattcacataattcatgaagaaaatgcagaaacaacttggtcacattattcacaccctcttcatcctt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067618 tatagaaaccattgaagaaatataaacataaatattcacataattcatgaagaaaatgcagaaacaacttggtcacattattcacaccctcttcatcctt 27067519  T
Q  217 ctctccatactcactgtaagtttannnnnnncttcatttcatcactattttgttgtccaataattaattgttgcataaatactttaaatgttagtatctt 316  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27067518 ctctccatactcactgtaagttta-ttttttcttcatttcatcactattttgttgtccaataattaattgttgcataaatactttaaatgatagtatctt 27067420  T
Q  317 acactaaa 324  Q
    ||||||||    
T  27067419 acactaaa 27067412  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 27067344 - 27067307
Alignment:
Q  326 atttgagaaaattacataattctgtaattacaagtgtc 363  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27067344 atttgagaaaattacataattctgtaattacaagtgtc 27067307  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 18170533 - 18170485
Alignment:
Q  321 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 367  Q
    ||||||||||| |||||||||||||||  ||||||||||| ||||||||    
T  18170533 taaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggtg 18170485  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 18634101 - 18634053
Alignment:
Q  321 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 367  Q
    ||||||||||| |||||||||||||||  ||||||||||| ||||||||    
T  18634101 taaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggtg 18634053  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 24669445 - 24669489
Alignment:
Q  325 aatttgagaaaattacataattc--tgtaattacaagtgtcggtg 367  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||    
T  24669445 aatttgaggaaattacataattcagtgtaattacaagtgtcggtg 24669489  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 40332203 - 40332247
Alignment:
Q  325 aatttgagaaaattacataattc--tgtaattacaagtgtcggtg 367  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||    
T  40332203 aatttgagaaaatcacataattcagtgtaattacaagtgtcggtg 40332247  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 27945046 - 27945097
Alignment:
Q  318 cactaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 367  Q
    |||||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  27945046 cactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtg 27945097  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 367
Target Start/End: Original strand, 21880159 - 21880208
Alignment:
Q  320 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 367  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  21880159 ctaataatttgagaaaattacataattcagtgtaattacaagtgtcggtg 21880208  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 367
Target Start/End: Original strand, 28155577 - 28155626
Alignment:
Q  320 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 367  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  28155577 ctaataatttgagaaaattacataattcggtgtaattacaagtgtcggtg 28155626  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 192296 - 192250
Alignment:
Q  325 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgcc 369  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  192296 aatttgagaaaattacataattcggtgtaattacaagtgtctgtgcc 192250  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 367
Target Start/End: Original strand, 63780 - 63829
Alignment:
Q  320 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 367  Q
    |||| |||||||||||||||||||||||  || |||||||||||||||||    
T  63780 ctaataatttgagaaaattacataattcagtgcaattacaagtgtcggtg 63829  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 363
Target Start/End: Original strand, 92814 - 92859
Alignment:
Q  320 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtc 363  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||    
T  92814 ctaataatttgagaaaattacataattcagtgtaattacaagtgtc 92859  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 367
Target Start/End: Complemental strand, 7977882 - 7977833
Alignment:
Q  320 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 367  Q
    |||| ||||||| |||||||||||||||  ||||||||||||||||||||    
T  7977882 ctaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtg 7977833  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 367
Target Start/End: Original strand, 847958 - 848007
Alignment:
Q  320 ctaaaaatttgagaaaattacataatt--ctgtaattacaagtgtcggtg 367  Q
    |||| ||||||||||||||||||||||  || ||||||||||||||||||    
T  847958 ctaataatttgagaaaattacataattcactataattacaagtgtcggtg 848007  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 367
Target Start/End: Complemental strand, 41877522 - 41877473
Alignment:
Q  320 ctaaaaatttgagaaaattacataatt--ctgtaattacaagtgtcggtg 367  Q
    |||| ||||||||||||||||||||||   ||||||||||||||||||||    
T  41877522 ctaataatttgagaaaattacataatttagtgtaattacaagtgtcggtg 41877473  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 367
Target Start/End: Complemental strand, 6612218 - 6612174
Alignment:
Q  325 aatttgagaaaattacataattc--tgtaattacaagtgtcggtg 367  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||    
T  6612218 aatttgaaaaaattacataattcagtgtaattacaagtgtcggtg 6612174  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 31015050 - 31015097
Alignment:
Q  320 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcgg 365  Q
    |||| ||||||||||||| |||||||||  ||||||||||||||||||    
T  31015050 ctaataatttgagaaaatcacataattcagtgtaattacaagtgtcgg 31015097  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 363
Target Start/End: Complemental strand, 6326344 - 6326304
Alignment:
Q  325 aatttgagaaaattacataattc--tgtaattacaagtgtc 363  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  6326344 aatttgagaaaattacataattcagtgtaattacaagtgtc 6326304  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 4991012 - 4990972
Alignment:
Q  327 tttgagaaaattacataattc--tgtaattacaagtgtcgg 365  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  4991012 tttgagaaaattacataattcagtgtaattacaagtgtcgg 4990972  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 53192 - 53239
Alignment:
Q  325 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccg 370  Q
    ||||||||||||| |||||||||  |||||||| ||||||||||||||    
T  53192 aatttgagaaaatcacataattcagtgtaattataagtgtcggtgccg 53239  T

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