View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_36 (Length: 340)
Name: NF11274_low_36
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 162 - 332
Target Start/End: Complemental strand, 25320803 - 25320633
Alignment:
| Q |
162 |
ctctccttttattcttgacatattgaaaggagtggatcaaatgtcaaaggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatg |
261 |
Q |
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| T |
25320803 |
ctctccttttattcttgacatattgaaaggagtggatcaaatgtcaaaggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatg |
25320704 |
T |
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| Q |
262 |
aaataagttatggcttatatcacgtagatatgaacgatccaagtttgaagagacaacctaaactctctgct |
332 |
Q |
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| T |
25320703 |
aaataagttatggcttatatcacgtagatatgaacgatccaagtttgaagagacaacctaaactctctgct |
25320633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 25320943 - 25320870
Alignment:
| Q |
16 |
cactaaggtacttctaattcgatttccaactataaagtttttattatatctatgatgttacaaaccttcatatt |
89 |
Q |
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| T |
25320943 |
cactaaggtacttctaattcgatttccaactataaagtttttattatatctatgatgttacaaaccttcatatt |
25320870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 332
Target Start/End: Complemental strand, 25326588 - 25326440
Alignment:
| Q |
184 |
ttgaaaggagtggatcaaatgtcaaaggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatgaaataagttatggcttatatca |
283 |
Q |
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| T |
25326588 |
ttgaaaggagtggatcgaatataaaaggttattttgtatggtccttcatggatgtgcttgaaatactgagtggatatgaagaaagttttggtctatacta |
25326489 |
T |
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| Q |
284 |
cgtagatatgaacgatccaagtttgaagagacaacctaaactctctgct |
332 |
Q |
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| T |
25326488 |
catagatatgaaggatccaaacttgaagagacaacctaagctctctgct |
25326440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 5216486 - 5216370
Alignment:
| Q |
209 |
aggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatgaaataagttatggcttatatcacgtagatatgaacgatccaagtttg |
308 |
Q |
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|||||| ||||||||| ||| ||||||| ||| || ||| | |||||||||||| |||||||||||||||| || ||||| || | ||||||| ||| |
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| T |
5216486 |
aggttactttgtatgggcctttttggatgtgtttgagttactaggtggatatgaagcaagttatggcttatattacatagatttggaagatccaaccttg |
5216387 |
T |
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| Q |
309 |
aagagacaacctaaact |
325 |
Q |
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| T |
5216386 |
aggaggcaacctaaact |
5216370 |
T |
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