View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_44 (Length: 289)
Name: NF11274_low_44
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 28605466 - 28605741
Alignment:
| Q |
1 |
ttgataaggagtggaacattgacaagttttacataaaaagtgaaactaacctcaaaaatattatttcacctaatagatcattacnnnnnnnnnaagttca |
100 |
Q |
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| T |
28605466 |
ttgataaggagtggagcattgacaagtcttacataaaaagtgaaactaaactcaaaaatattatttcacctaatagatcattaatttttttttaagttca |
28605565 |
T |
|
| Q |
101 |
actctccctctaaatttagggatannnnnnnccacgcacatataatttggaaaaatctagaaaaaatacaagttttttgccataccaatagataaatgta |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28605566 |
actctccctctaaatttagggatatttttttccacgcacatatactttggaaaaatctagaaaaaatacaagttttttgccataccaatagataaatgta |
28605665 |
T |
|
| Q |
201 |
ctttgtcacaaagtgtacttttaaagggatacagtttttaagaaatcttggaggaaaaagtacttctttcaaatct |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28605666 |
ctttgtcacaaagtgtacttttaaagggatacagtttttaagaaatcttggaggaaaaagtacttctttcaaatct |
28605741 |
T |
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