View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_45 (Length: 268)
Name: NF11274_low_45
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 27744948 - 27745198
Alignment:
| Q |
1 |
tgtaggctgttgacttgtatgtagtattcaattcatttgtcccacctaatggaatgatcaaatctgtagctatctatccaactgagtttggccttcaacg |
100 |
Q |
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| T |
27744948 |
tgtaggctgttgacttgtatgtagtattcaattcatttgtcccacctaatggaatgatcaaatctgtagctatctatccaactgagtttggccttcaacg |
27745047 |
T |
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| Q |
101 |
tttgaaagaggagaatattcatggacctgttctatttcacaatgaaaatgatataagtgatgaagatatcaatgagaatatgcgtgcctatcagaagagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27745048 |
tttgaaagaggagaatattcatggacctgttctatttcacaatgaaaatgatataagtgatgaagatatcaatgagaatatgcgtgcctatcagaagagc |
27745147 |
T |
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| Q |
201 |
atgatgcggtatatataataaccataaaactgacttgttccgtgacacatt |
251 |
Q |
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| T |
27745148 |
atgatgcggtatatataataaccataaaactgacttgtgccgtgacacatt |
27745198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 38529503 - 38529391
Alignment:
| Q |
1 |
tgtaggctgttgacttgtatgtagtattcaattcatttgtcccacctaatggaatgatcaaatctgtagctatctatccaactgagtttggccttcaacg |
100 |
Q |
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||||||||||||||||||||||| |||| | |||||| | |||| ||| |||| |||||||||| ||| |||| |||||||| ||||||||||||||||| |
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| T |
38529503 |
tgtaggctgttgacttgtatgtattatttagttcattagccccaactagtggactgatcaaatcggtaactatttatccaaccgagtttggccttcaacg |
38529404 |
T |
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| Q |
101 |
tttgaaagaggag |
113 |
Q |
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| T |
38529403 |
tatgaatgaggag |
38529391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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