View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_46 (Length: 264)
Name: NF11274_low_46
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 43921534 - 43921778
Alignment:
| Q |
15 |
aagcatatgaagagagtcaaacccnnnnnnnctagtcgattaggtgagagtttcctagcttaaagaagtatattgaacatttttgtctactcaatataaa |
114 |
Q |
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| T |
43921534 |
aagcatacgaagagagtcaaacccaaaaaaactagtcgattaagtgagagtctcctaacttaaagaagtatattgaaaaaatttgtctactcaatataaa |
43921633 |
T |
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| Q |
115 |
acttctaacaattttactttaatccgaaaataatgataattagtccatgtaaatgaaaatcgtcccaatataatttgctcataattaatcaagattcaaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43921634 |
acttctaacaattttactttaatccgaaaataatgataattagtccatgtaaatgaaaatcgttccaatataatttgctcataattaatcaagattcaaa |
43921733 |
T |
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| Q |
215 |
aatgaagttgatttaactttaactaaccattcacattcatctcac |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43921734 |
aatgaagttgatttaactttaactaaccattcacattcatttcac |
43921778 |
T |
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