View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_47 (Length: 264)
Name: NF11274_low_47
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_47 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 7081875 - 7081630
Alignment:
| Q |
19 |
gtttcagcagttggaaactcttactttgatgcctatgttttatcagaatcaagtctctttgtatatccaacaaagatcataatcaaaacttgtggaacta |
118 |
Q |
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| T |
7081875 |
gtttcagcagttggaaactcttactttgatgcctatgttttatcagaatcaagtctctttgtatatccaacaaagatcataatcaaaacttgtggaacta |
7081776 |
T |
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| Q |
119 |
cacaacttctcaaatccatcattcccttaatctactttgcaaacactcaccttaactttacactctcctcagtttcttacacaagaggtagcttcatctt |
218 |
Q |
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| T |
7081775 |
cacaacttctcaaatccatcattcccttaatctactttgcaaacactcaccttaactttacactctcctcagtttcttacacaagaggtagcttcatctt |
7081676 |
T |
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| Q |
219 |
cccaaattcacaacctttccctcacacttccttcaatgaagaagtt |
264 |
Q |
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| T |
7081675 |
cccaaattcacaacctttccctcacacttccttcaatgaagaagtt |
7081630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 49019927 - 49020070
Alignment:
| Q |
19 |
gtttcagcagttggaaactcttactttgatgcctatgttttatcagaatcaagtctctttgtatatccaacaaagatcataatcaaaacttgtggaacta |
118 |
Q |
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|||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||| | |
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| T |
49019927 |
gtttcagcagttggtaactcttactttgatgcatacgttttatcagaatcaagcctctttgtttatccaactaagatcataatcaaaacatgtggaacaa |
49020026 |
T |
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| Q |
119 |
cacaacttctcaaatccatcattcccttaatctactttgcaaac |
162 |
Q |
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| T |
49020027 |
cccaacttctcaaatccattcttccattaattcactatgcaaac |
49020070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 49020101 - 49020168
Alignment:
| Q |
196 |
tacacaagaggtagcttcatcttcccaaattcacaacctttccctcacacttccttcaatgaagaagt |
263 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||||| ||||| |
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| T |
49020101 |
tacacaagaggaagcttcatcttcccaaatgcacaacctttcccttacacaagcttcaatgacgaagt |
49020168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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