View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11274_low_5 (Length: 661)
Name: NF11274_low_5
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 127 - 638
Target Start/End: Original strand, 2102304 - 2102812
Alignment:
| Q |
127 |
aatgtagccaacactttatgtctctttataggtccatggagtcagccaaggactcggcattgaaacaaataattccgctgaatataatggtctaattttg |
226 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2102304 |
aatgtagctaacactttatgtctctttataggtccatggcgtcagccaaggactcggcattcaaacaaataattccgctgaatataatggtctaattttg |
2102403 |
T |
|
| Q |
227 |
gggctgaaagaagctagcaaccaaggatatgagcatgttcatgtccgaggtgactctcagcttgtctgcaagcaggttagttccccttaatgtgtatgca |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
2102404 |
gggctgaaagaagctagcaaccaaggatatgagcatgttcatgtccgaggtgactctcagcttgtctgcaagcaggttagttccc-ttactgtgtatgca |
2102502 |
T |
|
| Q |
327 |
ctaacctaacttcatttattataactttatcacttaaattgtatctgaatgaattgaataatgataacattaaaagataatccgaatttaccatcatatt |
426 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2102503 |
ttaacctatcttcatgtattataactt-atcacttaaattgcatctgaatgaattgaataatgataacattaaaagataatccgaatttaccatcatatt |
2102601 |
T |
|
| Q |
427 |
tttattgggtttgcaacagtttgagggttcctggaaagtcaacaatccaaatttaaggaacctgtgcaatgaggctgtggagctgaagagtaacttcaag |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2102602 |
tttattgggtttgcaacagtttgagggttcctggaaagtcaacaatccaaatttaaggaacctgtgcaatgaggctgtggagctgaagagtaacttcaag |
2102701 |
T |
|
| Q |
527 |
tctgtccgtgttgaacatgttcctagggtatacactttgtctcatttggactattttgtttattgacacaatgaagaaaatgttttgtcaaattgttgcc |
626 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2102702 |
tccgtccgtgttgaacatgttcctagggtatacactttgtctcatttggactattttgtttattgacacaatgaagaaaatg-tttgtcaaattgttgcc |
2102800 |
T |
|
| Q |
627 |
tctcttgattgt |
638 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2102801 |
tctcttgattgt |
2102812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 2102222 - 2102306
Alignment:
| Q |
1 |
tgaatttgatggagcatccagtggaaatcctggaaggtctggtgccggagctgttctccgttctgcagatgggagtcgggtgaat |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2102222 |
tgaatttgatggagcatccagtggaaatcctggaaggtctggtgctggagctgttcttcgttctgcagatgggagtcgggtgaat |
2102306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 514
Target Start/End: Original strand, 2054369 - 2054455
Alignment:
| Q |
428 |
ttattgggtttgcaacagtttgagggttcctggaaagtcaacaatccaaatttaaggaacctgtgcaatgaggctgtggagctgaag |
514 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||| ||||||| | ||||| ||||| |||||||||||||| || |||||||| |
|
|
| T |
2054369 |
ttattggttttgcaacagtttctgggttcatggaaaatcaacaaccagtatttatggaacttgtgcaatgaggctttgcagctgaag |
2054455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 514
Target Start/End: Original strand, 2088575 - 2088661
Alignment:
| Q |
428 |
ttattgggtttgcaacagtttgagggttcctggaaagtcaacaatccaaatttaaggaacctgtgcaatgaggctgtggagctgaag |
514 |
Q |
| |
|
||||||| ||||||||||||| ||||||| || || || ||||| |||||||||||| | | || || |||||| ||||||||||| |
|
|
| T |
2088575 |
ttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgtaacgaggctttggagctgaag |
2088661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 230; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 2 - 311
Target Start/End: Complemental strand, 39183856 - 39183543
Alignment:
| Q |
2 |
gaatttgatggagcatccagtggaaatcctggaaggtctggtgccggagctgttctccgttctgcagatgggagtcgggtgaatactctatccatcaaat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39183856 |
gaatttgatggagcatccagtggaaatcctggaaggtctggtgcaggagctgttctgcgttctgcagatgggagtcgggtgaatactctatccatcaaat |
39183757 |
T |
|
| Q |
102 |
catttttgcattatacaatatatcaaa------tgtagccaacactttatgtctctttataggtccatggagtcagccaaggactcggcattgaaacaaa |
195 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||| | |||||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||| |
|
|
| T |
39183756 |
catttttgcactatacaatatgtcaaagtcaaatgtacctaacacttt--gtctctttataggtccatggcgtcagccaaggactcggcactcaaacaaa |
39183659 |
T |
|
| Q |
196 |
taattccgctgaatataatggtctaattttggggctgaaagaagctagcaaccaaggatatgagcatgttcatgtccgaggtgactctcagcttgtctgc |
295 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39183658 |
taattctgctgaatataatggtctaattttggggctgaatgaagctaggaaccaaggatatgagcatgttcatgtccgaggtgactctcagcttgtttgc |
39183559 |
T |
|
| Q |
296 |
aagcaggttagttccc |
311 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39183558 |
aagcaggttagttccc |
39183543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 425 - 611
Target Start/End: Complemental strand, 39183087 - 39182901
Alignment:
| Q |
425 |
tttttattgggtttgcaacagtttgagggttcctggaaagtcaacaatccaaatttaaggaacctgtgcaatgaggctgtggagctgaagagtaacttca |
524 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
39183087 |
tttttattggttttgcaacagtttgagggttcctggaaagtcaacaacccaaatttaaggaacctttgtaatgaggctgtggagctgaagagtaacttca |
39182988 |
T |
|
| Q |
525 |
agtctgtccgtgttgaacatgttcctagggtatacactttgtctcatttggactattttgtttattgacacaatgaagaaaatgttt |
611 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39182987 |
agtcagtcagtgtcgaacatgttcctagggtatacactttgtctcatttggactattttgtttgttgacacaatgaagaaaatgttt |
39182901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 4952165 - 4952093
Alignment:
| Q |
127 |
aatgtagccaacactttatgtctctttataggtccatggagtcagccaaggactcggcattgaaacaaataat |
199 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||||| |||||||||||||||||| | |||||| |||| |
|
|
| T |
4952165 |
aatgtagctaactctttatatctctttataggtccatggcatcagccaaggactcggcactaaaacaagtaat |
4952093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University