View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_50 (Length: 250)
Name: NF11274_low_50
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_50 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 8152460 - 8152577
Alignment:
| Q |
131 |
ggtcacgacttcaacatatatagatcattgaaactgacaagagtttatagctatatagagcgaatcatatgttatgacactttcttatcatccataagat |
230 |
Q |
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| T |
8152460 |
ggtcacgacttcaacatatatagatcattgaaactgacaagagattatagctatatagag--aatcatatgttatgacactttcttatcatccataagat |
8152557 |
T |
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| Q |
231 |
agtattcgaacatccaaaac |
250 |
Q |
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| T |
8152558 |
agtattcgaacatccaaaac |
8152577 |
T |
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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 8152342 - 8152422
Alignment:
| Q |
12 |
atgaacatttaatatgttcttaacacctctcctcttttgagtaataaattacttaacattttttattggaagatgttagaat |
93 |
Q |
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| T |
8152342 |
atgaacatttaatatgttcttaacacctcttctcttttgagtaacaaattactt-acattttttattggaagatattagaat |
8152422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 43948813 - 43948772
Alignment:
| Q |
26 |
tgttcttaacacctctcctcttttgagtaataaattacttaa |
67 |
Q |
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| T |
43948813 |
tgttcttaacatctctcctcttttgagtaataaatcacttaa |
43948772 |
T |
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