View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_52 (Length: 250)
Name: NF11274_low_52
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 7422178 - 7422414
Alignment:
| Q |
1 |
tgagaaaatagaagtgattgaatgtaattatatgtgttggtgtcgtggtggtgttcgacaccagacacacctttcaatttgaaatatcggtgctaaatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7422178 |
tgagaaaatagaagtgattgaatgtaattatatgtgttggtgtcgtggtggtgttcgacaccagacacacctttcaatttgaagtatcggtgctaaatag |
7422277 |
T |
|
| Q |
101 |
gtgcaattcttgatattcctgagaattgcagttaaatgattctaatgtgtggggagacataaaaacctttgatgttgaagcctaggtcatacctgcagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7422278 |
gtgcaattcttgatattcctgagaattgcagttaaatgattctaatgtgtggggagacataaaaacctttgatgttgaagcctaggtcatacctgcagac |
7422377 |
T |
|
| Q |
201 |
ttgtttcgaaacattagttgtggttatattgtgatct |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7422378 |
ttgtttcgaaacattagttgtggttatattgtgatct |
7422414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22402399 - 22402445
Alignment:
| Q |
1 |
tgagaaaatagaagtgattgaatgtaattatatgtgttggtgtcgtg |
47 |
Q |
| |
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||||||||||||||||||||||||||| | |||||| ||||||||| |
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| T |
22402399 |
tgagaaaatagaagtgattgaatgtaaccacatgtgtcggtgtcgtg |
22402445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 21470234 - 21470206
Alignment:
| Q |
17 |
attgaatgtaattatatgtgttggtgtcg |
45 |
Q |
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| T |
21470234 |
attgaatgtaattatatgtgttggtgtcg |
21470206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 43978437 - 43978397
Alignment:
| Q |
3 |
agaaaatagaagtgattgaatgtaattatatgtgttggtgt |
43 |
Q |
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|||||| ||||||||| |||||||| ||||||||||||||| |
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| T |
43978437 |
agaaaacagaagtgatagaatgtaactatatgtgttggtgt |
43978397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 28735854 - 28735820
Alignment:
| Q |
3 |
agaaaatagaagtgattgaatgtaattatatgtgt |
37 |
Q |
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|
||||||||||||||||||||||||||||||||||| |
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|
| T |
28735854 |
agaaaatagaagtgattgaatgtaattatatgtgt |
28735820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15874245 - 15874202
Alignment:
| Q |
1 |
tgagaaaatagaagtgattgaatgtaattatatgtgttggtgtcg |
45 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| ||||||| |
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|
| T |
15874245 |
tgagaaaataaaa-tgattgaatgtaattatatgtgtcggtgtcg |
15874202 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8518048 - 8518094
Alignment:
| Q |
1 |
tgagaaaatagaagtgattgaatgtaattatatgtgttggtgtcgtg |
47 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||| ||||||||| |
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|
| T |
8518048 |
tgagaaaatagaagtaattgaatgtaactaaatgtgtcggtgtcgtg |
8518094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 4005145 - 4005186
Alignment:
| Q |
5 |
aaaatagaagtgattgaatgtaattatatgtgttggtgtcgt |
46 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||| |
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| T |
4005145 |
aaaatagaagtgattgaatgtaattacatgtgtcagtgtcgt |
4005186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 29651800 - 29651756
Alignment:
| Q |
3 |
agaaaatagaagtgattgaatgtaattatatgtgttggtgtcgtg |
47 |
Q |
| |
|
|||||||||||||||||||| |||| | |||||||||||||||| |
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| T |
29651800 |
agaaaatagaagtgattgaacgtaacaacatgtgttggtgtcgtg |
29651756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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