View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_53 (Length: 250)
Name: NF11274_low_53
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_53 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 37831376 - 37831539
Alignment:
| Q |
87 |
gtaactcatcattttcataaacggtgaactgtacaaatgaatatcaacaaggacatgaaagagagtacggataatttcaataattagattaggtgtacca |
186 |
Q |
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| T |
37831376 |
gtaactcttcattttcataaacggtgtactgtacaaatgaatttcaacaaggacatgaaagagagtatggaaaatttcaataattagattaggtgtacca |
37831475 |
T |
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| Q |
187 |
ttatccgttgcctttgcaccactaatatactacatcctgaaaaagtaaaaattgttgagcaatc |
250 |
Q |
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| T |
37831476 |
ttatccgttgcctttgcaccactaatatactacatcctgaaaaagtaaaaattgttgagcaatc |
37831539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 37831220 - 37831277
Alignment:
| Q |
8 |
aagcagagacgagcttacgtacagtgaattgtattgtaaagtaactgatgctagcatt |
65 |
Q |
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| T |
37831220 |
aagcaaagacgagcttacgtacagtgaattgtattgtaaagtaactgatgctagcatt |
37831277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 37839428 - 37839486
Alignment:
| Q |
132 |
aacaaggacatgaaagagagtacggataatttcaataattagattaggtgtaccattat |
190 |
Q |
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| T |
37839428 |
aacaaggacaggaaagagagcatggataatttcaataattggattatttgtaccattat |
37839486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 38392067 - 38392009
Alignment:
| Q |
132 |
aacaaggacatgaaagagagtacggataatttcaataattagattaggtgtaccattat |
190 |
Q |
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| T |
38392067 |
aacaaggacaggaaagagagcatggataatttcaataattggattatctgtaccattat |
38392009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 38400652 - 38400598
Alignment:
| Q |
136 |
aggacatgaaagagagtacggataatttcaataattagattaggtgtaccattat |
190 |
Q |
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| T |
38400652 |
aggacaggaaagaaagcatggataatttcaataattggattatgtgtaccattat |
38400598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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