View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11274_low_54 (Length: 249)

Name: NF11274_low_54
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11274_low_54
NF11274_low_54
[»] chr5 (3 HSPs)
chr5 (1-244)||(40141257-40141500)
chr5 (43-82)||(28322259-28322298)
chr5 (43-90)||(15086716-15086763)
[»] chr1 (3 HSPs)
chr1 (43-84)||(3451873-3451914)
chr1 (39-87)||(31667439-31667487)
chr1 (45-89)||(50195460-50195504)
[»] chr7 (3 HSPs)
chr7 (43-118)||(46179876-46179951)
chr7 (43-90)||(10893863-10893910)
chr7 (36-76)||(24401840-24401880)
[»] chr4 (5 HSPs)
chr4 (43-77)||(2796564-2796598)
chr4 (36-106)||(13307888-13307957)
chr4 (45-89)||(20204669-20204714)
chr4 (53-90)||(50699198-50699235)
chr4 (54-90)||(31901271-31901307)
[»] chr6 (6 HSPs)
chr6 (48-88)||(24821696-24821736)
chr6 (45-84)||(4012740-4012779)
chr6 (43-76)||(32577472-32577505)
chr6 (43-75)||(4945278-4945310)
chr6 (45-89)||(8419130-8419174)
chr6 (54-90)||(10038438-10038474)
[»] chr3 (1 HSPs)
chr3 (43-84)||(49636826-49636867)
[»] chr2 (2 HSPs)
chr2 (43-84)||(35198231-35198272)
chr2 (45-89)||(31498227-31498270)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 40141257 - 40141500
Alignment:
Q  1 agacaaactccggacacaacatggacatgagaaataatttttagaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacccccacgtgtc 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40141257 agacaaactccggacacaacatggacatgagaaatcatttttagaaaatgaattaattgaatttaaccacatgtgttggtgtcggacacccccacgtgtc 40141356  T
Q  101 agacactagacaagccttgcatcaaaagtgtcaatgtgaaaataaaaaactgctgcttacttttgatcatcaacctccactcttatgtcattaacactga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141357 agacactagacaagccttgcatcaaaagtgtcaatgtgaaaataaaaaactgctgcttacttttgatcatcaacctccactcttatgtcattaacactga 40141456  T
Q  201 caccaggaacttccaccatgataacatatttactctctgcttct 244  Q
    |||||||||||||||||||||||||||||||||| |||| ||||    
T  40141457 caccaggaacttccaccatgataacatatttactttctgattct 40141500  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 28322259 - 28322298
Alignment:
Q  43 agaaaatgaattaattgaatttaatcacatgtgttggtgt 82  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  28322259 agaaaatgaattaattgaatgtaatcacatgtgttggtgt 28322298  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 15086716 - 15086763
Alignment:
Q  43 agaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacc 90  Q
    ||||| ||||||| |||||  |||||||||||||||||||||||||||    
T  15086716 agaaagtgaattatttgaacgtaatcacatgtgttggtgtcggacacc 15086763  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 3451873 - 3451914
Alignment:
Q  43 agaaaatgaattaattgaatttaatcacatgtgttggtgtcg 84  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  3451873 agaaaacgaattaattgaatttaatcacatgtgttggtgtcg 3451914  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 31667439 - 31667487
Alignment:
Q  39 ttttagaaaatgaattaattgaatttaatcacatgtgttggtgtcggac 87  Q
    |||||||||||||  ||||| ||| ||||||||||||| ||||||||||    
T  31667439 ttttagaaaatgacataattaaatgtaatcacatgtgtcggtgtcggac 31667487  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 50195504 - 50195460
Alignment:
Q  45 aaaatgaattaattgaatttaatcacatgtgttggtgtcggacac 89  Q
    |||||||  ||||||||| ||||||||||||| ||||||||||||    
T  50195504 aaaatgacataattgaatgtaatcacatgtgtcggtgtcggacac 50195460  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 46179951 - 46179876
Alignment:
Q  43 agaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacccccacgtgtcagacactagacaagcctt 118  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||| ||  |||| ||||  |||||||||| |||||    
T  46179951 agaaaataaattaattgaatataatcacatgtgtcggtgtcggaaacaaccacatgtccaacactagacatgcctt 46179876  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 10893910 - 10893863
Alignment:
Q  43 agaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacc 90  Q
    |||||||||  ||||||||| |||||||||||||||||||| ||||||    
T  10893910 agaaaatgacataattgaatgtaatcacatgtgttggtgtctgacacc 10893863  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 24401840 - 24401880
Alignment:
Q  36 aatttttagaaaatgaattaattgaatttaatcacatgtgt 76  Q
    |||||| |||||||| ||||||||||| |||||||||||||    
T  24401840 aattttgagaaaatggattaattgaatgtaatcacatgtgt 24401880  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 2796564 - 2796598
Alignment:
Q  43 agaaaatgaattaattgaatttaatcacatgtgtt 77  Q
    |||||||||||||||||||||||||||||||||||    
T  2796564 agaaaatgaattaattgaatttaatcacatgtgtt 2796598  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 13307888 - 13307957
Alignment:
Q  36 aatttttagaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacccccacgtgtcagacac 106  Q
    |||||| |||||||||  ||||| ||| |||||||| |||||||||||||||| |  ||||||||||||||    
T  13307888 aattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcggaca-cgacacgtgtcagacac 13307957  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 20204714 - 20204669
Alignment:
Q  45 aaaatgaattaattgaatttaatcacatgtgt-tggtgtcggacac 89  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||    
T  20204714 aaaatgaattaattgaacgtaatcacatgtgtatggtgtcggacac 20204669  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 50699198 - 50699235
Alignment:
Q  53 ttaattgaatttaatcacatgtgttggtgtcggacacc 90  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  50699198 ttaattgaatgtaatcacatgtgttggtgttggacacc 50699235  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 31901307 - 31901271
Alignment:
Q  54 taattgaatttaatcacatgtgttggtgtcggacacc 90  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  31901307 taattgaatgtaatcacatgtgctggtgtcggacacc 31901271  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 24821696 - 24821736
Alignment:
Q  48 atgaattaattgaatttaatcacatgtgttggtgtcggaca 88  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  24821696 atgaattaattgaatgtaatcacatgtgttggtgtctgaca 24821736  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 4012740 - 4012779
Alignment:
Q  45 aaaatgaattaattgaatttaatcacatgtgttggtgtcg 84  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  4012740 aaaatgaattaattgaatataatcacatgtgtttgtgtcg 4012779  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 32577505 - 32577472
Alignment:
Q  43 agaaaatgaattaattgaatttaatcacatgtgt 76  Q
    |||||||||||||||||||| |||||||||||||    
T  32577505 agaaaatgaattaattgaatgtaatcacatgtgt 32577472  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 4945278 - 4945310
Alignment:
Q  43 agaaaatgaattaattgaatttaatcacatgtg 75  Q
    |||||||||||||||||||| ||||||||||||    
T  4945278 agaaaatgaattaattgaatgtaatcacatgtg 4945310  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 8419130 - 8419174
Alignment:
Q  45 aaaatgaattaattgaatttaatcacatgtgttggtgtcggacac 89  Q
    |||| ||||||||||||| |||| |||||||| ||||||||||||    
T  8419130 aaaaagaattaattgaatgtaatgacatgtgtcggtgtcggacac 8419174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 10038474 - 10038438
Alignment:
Q  54 taattgaatttaatcacatgtgttggtgtcggacacc 90  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  10038474 taattgaatataatcacatgtgttggtgtccgacacc 10038438  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 49636867 - 49636826
Alignment:
Q  43 agaaaatgaattaattgaatttaatcacatgtgttggtgtcg 84  Q
    |||||||||||||||||||| |||||||||| | ||||||||    
T  49636867 agaaaatgaattaattgaatgtaatcacatgcgctggtgtcg 49636826  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 35198272 - 35198231
Alignment:
Q  43 agaaaatgaattaattgaatttaatcacatgtgttggtgtcg 84  Q
    |||||||||||||||||||| ||||||||||||  |||||||    
T  35198272 agaaaatgaattaattgaatgtaatcacatgtgacggtgtcg 35198231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 31498270 - 31498227
Alignment:
Q  45 aaaatgaattaattgaatttaatcacatgtgttggtgtcggacac 89  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||    
T  31498270 aaaatgaattaattgaatgtaattacatgtg-tggtgtcggacac 31498227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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