View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_56 (Length: 246)
Name: NF11274_low_56
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_56 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 17224615 - 17224847
Alignment:
| Q |
14 |
ggacatcaataggtgctagtcctcccacatttaaaacaccaatagctctaaggataaattgtggtaccccttgaaaaatannnnnnnctctccactctga |
113 |
Q |
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| T |
17224615 |
ggacaccaataggtgctagtcctcccacatttaaaacaccaatagctctaaggataaattgtggtaccccttgaaaaatatttttttctctccactctga |
17224714 |
T |
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| Q |
114 |
aatttattttaacccccctcctcctgtttatccacaggcattgctcatgtatgttatctgactctgaagaaaagatgtaggttttcaaagagagaataca |
213 |
Q |
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| T |
17224715 |
aatttattttaacccccctcctcctgtttatccacaggcattgctcatgtatgttatctgactctgaagaaaagatgtaggttttcaaagagagaataca |
17224814 |
T |
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| Q |
214 |
taaatcatttggtttttctgatatttgaggttc |
246 |
Q |
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| T |
17224815 |
taaatcatttggtttttctgatatttgaggttc |
17224847 |
T |
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