View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_58 (Length: 240)
Name: NF11274_low_58
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_58 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 17225122 - 17224900
Alignment:
| Q |
18 |
gaattgattgttcatattcaatacaatagcaacaattatctcggttacaatttgatccattacatttcctcagttccagctttaggataggcttcctcat |
117 |
Q |
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| T |
17225122 |
gaattgattgttcatattcaatacaatagcaacaattatctcggttacaatttgatccattacatttcctcagttccagctttaggataggcttcctcat |
17225023 |
T |
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| Q |
118 |
ctcacaatgttatttcttttctacctctcccttgtccctcaaagtctttcctatatcccctccactcattataatattttcccttatcctacccatcatt |
217 |
Q |
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| T |
17225022 |
ctcacaatgttatttcttttctacctctcccttgtccctcaaagtctttcctatatcccctccactcattataatattttcccttatcctacccatcatt |
17224923 |
T |
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| Q |
218 |
ccccatcagcaccatatttaact |
240 |
Q |
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| T |
17224922 |
ccccatcagcaccatatttaact |
17224900 |
T |
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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 7051322 - 7051385
Alignment:
| Q |
18 |
gaattgattgttcatattcaatacaatagcaacaattatctcggttacaatttgatccattaca |
81 |
Q |
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| T |
7051322 |
gaattgattgttcatattcaatgcaatagcaacaattatctctgttacaatttgatccattaca |
7051385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 39948290 - 39948421
Alignment:
| Q |
116 |
atctcacaatgttatttcttttctacctctcccttgtccctcaaagtctttcctatatcccctccactcattataatattttccctta-------tccta |
208 |
Q |
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| T |
39948290 |
atctcacaatgttatttcatttctacctttccgtcgtccctcaaaggctttactatatcccctgtactcatttacatattttcccttattttttctccta |
39948389 |
T |
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| Q |
209 |
cccatcattccccatcagcaccatatttaact |
240 |
Q |
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| T |
39948390 |
ctcatcattcctcatcagcaccataattaact |
39948421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 42735495 - 42735560
Alignment:
| Q |
18 |
gaattgattgttcatattcaatacaatagcaacaattatctcggttacaatttgatccattacatt |
83 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| |
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| T |
42735495 |
gaattgatagttcatattcaatacaatagaaacaattatctctgttacactttgatccattacatt |
42735560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 47762286 - 47762346
Alignment:
| Q |
18 |
gaattgattgttcatattcaatacaatagcaacaattatctcggttacaatttgatccatta |
79 |
Q |
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| T |
47762286 |
gaattgattgttcaaatt-aatacaatagcaacaattatctcttttacaatttgatccatta |
47762346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 11398142 - 11398080
Alignment:
| Q |
18 |
gaattgattgttcatattcaatacaatagcaacaattatctcggttacaatttgatccattaca |
81 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||| |||||||||| || ||||||| |
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| T |
11398142 |
gaattgattgttcaaatt-aatacaatagcaacaattatctttgttacaatttaatgcattaca |
11398080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 6904610 - 6904664
Alignment:
| Q |
29 |
tcatattcaatacaatagcaacaattatctcggttacaatttgatccattacatt |
83 |
Q |
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| T |
6904610 |
tcatattcaatacaatagcaacatttgtcttcattacaatttgatccattacatt |
6904664 |
T |
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