View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_59 (Length: 239)
Name: NF11274_low_59
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 8152752 - 8152937
Alignment:
| Q |
37 |
aagttatcgtctctaataaagattgttgttttcgaccaagcaattgagtaatcctataaataaaaatagtaaggtttatacttatgacgtctgacaaagt |
136 |
Q |
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| T |
8152752 |
aagttatcgtctcca-taaagattgttgttttcaaccaagcaattgagtaatcctataaataaaaatagtaaggtttatatttacgacgtctaacaaagt |
8152850 |
T |
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| Q |
137 |
aatacatactccgactatggttataggacccttcatgaaatatttttccactagtgttagtagggactaatattctcacgtgccttt |
223 |
Q |
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| T |
8152851 |
aatacatactccgactacggttataggacccttcatgaaatatttttccactagtgttagtagggactaatattctcacgtgccttt |
8152937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8152560 - 8152592
Alignment:
| Q |
1 |
tattcgaacatccaaaactaaatttgaatattt |
33 |
Q |
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| T |
8152560 |
tattcgaacatccaaaactaaatttgaatattt |
8152592 |
T |
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