View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11274_low_60 (Length: 239)
Name: NF11274_low_60
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_60 |
 | |
|
| [»] scaffold0662 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7422103 - 7421881
Alignment:
| Q |
1 |
tacgctgtgaccagaccacgaccgtaataaaaaaccttgttctaattaagcctacatttgagtataaatgaggttaatcaaactctaaaacagaaattnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7422103 |
tacgctgtgaccagaccacgaccgtaataaaaaaccttgatctaattaagcctacatttgagtataaatgaggttaatcaaactctaaaacagaaattaa |
7422004 |
T |
|
| Q |
101 |
nnnnngaataaaagaaacactaaccatcttgtgagaagagagggtaatcagaagcactaagattaacaaaccaatcccaatcaccaacccttttaagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7422003 |
aaaaagaataaaagaaacactaaccatcttgtgagaagagagggtaatcagaagcactaagattaacaaaccaatcccaatcaccaacccttttaagaaa |
7421904 |
T |
|
| Q |
201 |
caaagcaacagaatgaagcgttg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7421903 |
caaagcaacagaatgaagcgttg |
7421881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 47025897 - 47025860
Alignment:
| Q |
145 |
taatcagaagcactaagattaacaaaccaatcccaatc |
182 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47025897 |
taatcagaagcactaagattaataaaccaatcccaatc |
47025860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 33231013 - 33230950
Alignment:
| Q |
119 |
actaaccatcttgtgagaagagagggtaatcagaagcactaagattaacaaaccaatcccaatc |
182 |
Q |
| |
|
||||||||||||| | || ||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33231013 |
actaaccatcttgagtgacaagaggataatcagaagcactaagattaataaaccaatcccaatc |
33230950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 4776 - 4739
Alignment:
| Q |
145 |
taatcagaagcactaagattaacaaaccaatcccaatc |
182 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4776 |
taatcagaagcactaagattaataaaccaatcccaatc |
4739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 3034220 - 3034261
Alignment:
| Q |
145 |
taatcagaagcactaagattaacaaaccaatcccaatcacca |
186 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
3034220 |
taatcagaagcactaagattgataaaccaatcccaatcacca |
3034261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 9538146 - 9538180
Alignment:
| Q |
145 |
taatcagaagcactaagattaacaaaccaatccca |
179 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
9538146 |
taatcagaagcactaagattaataaaccaatccca |
9538180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 33717809 - 33717773
Alignment:
| Q |
145 |
taatcagaagcactaagattaacaaaccaatcccaat |
181 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33717809 |
taatcagaagcactaagattaataaaccaatcccaat |
33717773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University