View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11274_low_62 (Length: 239)
Name: NF11274_low_62
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 32023691 - 32023488
Alignment:
| Q |
16 |
aaataattcaataaacttatttaataatcaaagatcaaatcacataataaagattctcatctagttctaatcataaccaacaacgagggctttaggtact |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32023691 |
aaataattagataaacttatttaataatcaaagatcaaatcacataataaaggttctcatctagttctcatcataaccaacaacgagggctttaggtact |
32023592 |
T |
|
| Q |
116 |
aatgataaataaacaaaaagtagtgattaaaaaagaattacaaaaacaattcattcatgaacgattcttaagaaaaatcgttcaataatgttaagaataa |
215 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32023591 |
tatgataaataaacaaaaaatagtgattaaaaaagaattacaaaaa----taattcatgaacgattcttaagaaaaatcgttcaataatgttaagaataa |
32023496 |
T |
|
| Q |
216 |
cctccttt |
223 |
Q |
| |
|
|||||||| |
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| T |
32023495 |
cctccttt |
32023488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 14647898 - 14647960
Alignment:
| Q |
38 |
aataatcaaagatcaaatcacataataaagattctcatctagttctaatcataaccaacaacg |
100 |
Q |
| |
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|||||||| |||||||||||||||||||| | | ||||||||||||| |||| ||||||||| |
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|
| T |
14647898 |
aataatcatagatcaaatcacataataaaaaatttcatctagttctactcatttccaacaacg |
14647960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 46671340 - 46671385
Alignment:
| Q |
2 |
cacatagataacaaaaataattcaataaacttatttaataatcaaa |
47 |
Q |
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|||| |||||| |||||| |||||||||||||||| |||||||||| |
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| T |
46671340 |
cacagagataagaaaaatgattcaataaacttattcaataatcaaa |
46671385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 35023746 - 35023706
Alignment:
| Q |
7 |
agataacaaaaataattcaataaacttatttaataatcaaa |
47 |
Q |
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|||||| |||||| |||||||||||||||| |||||||||| |
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| T |
35023746 |
agataagaaaaatgattcaataaacttattcaataatcaaa |
35023706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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