View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_63 (Length: 238)
Name: NF11274_low_63
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44840564 - 44840343
Alignment:
| Q |
1 |
ttttaatcacttaaccttcgtgttaatgattgactgacaaaagtaatgatcctgaacagggcacacaaaaatgagttacagaagaagtgggaggcccttt |
100 |
Q |
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| T |
44840564 |
ttttaatcacttaaccttcgtgttaatgattgactgacaaaagtaatgatcctgaacagggcacacaaaaatgagttacagaagaagtgggaggcccttt |
44840465 |
T |
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| Q |
101 |
actgtggtccacaataatgattttcggggaaaatgtgtatctcaattttaccccaataatgagcagctgattcaaggtattgctgatgttaacctaggct |
200 |
Q |
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| T |
44840464 |
actgtggtccacaataatgattttcggggaaaatgtgtatctcaattttaccccaataatgagcagctgattcaaggtattgctgatgttaacctaggct |
44840365 |
T |
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| Q |
201 |
caggacaggatgatggcctatg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
44840364 |
caggacaggatgatggcctatg |
44840343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 44852329 - 44852109
Alignment:
| Q |
2 |
tttaatcacttaaccttcgtgttaatgattgactgacaaaagtaatgatcctgaacagggcacacaaaaatgagttacagaagaagtgggaggcccttta |
101 |
Q |
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| T |
44852329 |
tttaattacttaaccctagtattaatgattgactgataaaagtaacgatcctgaacagggtgtacaagaatgagttccagaagaggtggtaggcccttta |
44852230 |
T |
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| Q |
102 |
ctgtggtccacaataatgattttcgg------ggaaaatgtgtatctcaattttaccccaataatgagcagctgattcaaggtattgctgatgttaacct |
195 |
Q |
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| T |
44852229 |
ctgcggctggcaatgatgattttcagtccaagggaaaaggtgtatctcaatttgatcccaaaactgagcagctggctcaaggtattgctgatgttaactt |
44852130 |
T |
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| Q |
196 |
aggctcaggacaggatgatgg |
216 |
Q |
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|||||| |||||||||||||| |
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| T |
44852129 |
aggctctggacaggatgatgg |
44852109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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