View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_66 (Length: 226)
Name: NF11274_low_66
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_66 |
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| [»] scaffold1325 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 44800327 - 44800131
Alignment:
| Q |
15 |
acagactacactatctcactgccccactaagctaacggtaatgtatcattcactaaaataacagaaagtgaatgagtaatactactcctttcaatttttt |
114 |
Q |
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| T |
44800327 |
acagactacactatctcactgccccactaagctaacggtaatgtatcattcactaaaataacagaaagtgaatgagtaatactactcctttcaatttttt |
44800228 |
T |
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| Q |
115 |
acatgctttgttgttatctgtgatatcaaattgataattagaggaatatgatattcttttcctgg-nnnnnnnattaaatttgtgtgatgaagatat |
210 |
Q |
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| T |
44800227 |
acatgctttgttgttatctgtgatatcaaattgataattagaggaatatgatattcttttcctggttttttttattaaatttgtgtgatgaagatat |
44800131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 44797144 - 44797103
Alignment:
| Q |
78 |
gaaagtgaatgagtaatactactcctttcaattttttacatg |
119 |
Q |
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| T |
44797144 |
gaaagtaaatgaataataccactcctttcaattttttacatg |
44797103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 44804111 - 44804070
Alignment:
| Q |
78 |
gaaagtgaatgagtaatactactcctttcaattttttacatg |
119 |
Q |
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| T |
44804111 |
gaaagtaaatgaataatactactcctttcaactttttacatg |
44804070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1325 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1325
Description:
Target: scaffold1325; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 1825 - 1903
Alignment:
| Q |
133 |
tgtgatatcaaattgataattagaggaatatgatattcttttcctgg-nnnnnnnattaaatttgtgtgatgaagatat |
210 |
Q |
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| T |
1825 |
tgtgatatcaaattgataattagaggaatgggatattcttttcccggttttttgtattaaatttgtgtgatgaagatat |
1903 |
T |
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