View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11274_low_69 (Length: 217)
Name: NF11274_low_69
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 119630 - 119834
Alignment:
| Q |
1 |
tattcaacacctcatttattttctgtctatctccatctctatctttctatcatatcattaacataacacatcactctatatttgaatatttaaccaagtg |
100 |
Q |
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| T |
119630 |
tattcaacacctcatttattttctttctatctccatctctatctttctatcatatcattaacataacacaccactctatatttgaatatttaaccaagtg |
119729 |
T |
|
| Q |
101 |
attgagctcaagtggttaataaaccccctaaaagatgaatcatacgtatgaacccctaagagtttgattattggatagaatannnnnnnatctccatgac |
200 |
Q |
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| T |
119730 |
attgagctcaagtggttaataagtcccctaaaaaatgaatcatacgtacgaacccctaatagtttgattattggatagaatatttttttatctccatgac |
119829 |
T |
|
| Q |
201 |
aaact |
205 |
Q |
| |
|
||||| |
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|
| T |
119830 |
aaact |
119834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 45931571 - 45931612
Alignment:
| Q |
89 |
tttaaccaagtgattgagctcaagtggttaataaacccccta |
130 |
Q |
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|
| T |
45931571 |
tttaactaagtgattgagctcatgtggttaataaactcccta |
45931612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 5455568 - 5455601
Alignment:
| Q |
87 |
tatttaaccaagtgattgagctcaagtggttaat |
120 |
Q |
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|
| T |
5455568 |
tatttaaccaagtgattgagcttaagtggttaat |
5455601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 27796976 - 27796947
Alignment:
| Q |
91 |
taaccaagtgattgagctcaagtggttaat |
120 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
27796976 |
taaccaagtgattgagctcaagtggttaat |
27796947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 51728941 - 51728912
Alignment:
| Q |
91 |
taaccaagtgattgagctcaagtggttaat |
120 |
Q |
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|
|||||||||||||||||||||||||||||| |
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|
| T |
51728941 |
taaccaagtgattgagctcaagtggttaat |
51728912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 31620739 - 31620771
Alignment:
| Q |
88 |
atttaaccaagtgattgagctcaagtggttaat |
120 |
Q |
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||||||||||||||||| ||||||||||||||| |
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|
| T |
31620739 |
atttaaccaagtgattgtgctcaagtggttaat |
31620771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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