View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_7 (Length: 590)
Name: NF11274_low_7
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 25 - 574
Target Start/End: Original strand, 11586859 - 11587396
Alignment:
| Q |
25 |
atgatatattatctaagtagaataatttcaccgtaaaaattatatagacactataaataacatgttgtatcatcccatcatagctacttaaatattctac |
124 |
Q |
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| T |
11586859 |
atgatatattagctaagtagaataatttcaccgtaaaaattatatagacactataaataacatgttgtatcatcccataatagctacttaaatattctac |
11586958 |
T |
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| Q |
125 |
ctacaattttctaaatatgtattatatatttgataagctatgatattttcctaa--agga--actcagtaaacaagatttttgacctccttaaaggaact |
220 |
Q |
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| T |
11586959 |
ctataattttctaaaagtgtattatatatttgataagctatgatattttcctaagtattattactcaataaacaagatttttgacctccttaaa------ |
11587052 |
T |
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| Q |
221 |
cagacacacattatgggtgatcttaaaaggactcaaacacacatttgaggggattatatataaatcattaacactgaccactttcttaaattaagagtta |
320 |
Q |
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| T |
11587053 |
------cacattatgggtgatcttaaagggactcaaacacacatttgagggtattatatgtaaatcattaacattgacaactttcttaaattaagagtta |
11587146 |
T |
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| Q |
321 |
attacatctaggaacatgattgtattattaaattgcaattaaataccaaccatataattattggtatttatcctagacaaaaagtggtgaaaccacaatt |
420 |
Q |
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| T |
11587147 |
----catctaggaacatgattgtattattaaattgcaattaaataccaatcatataattattggtatttatcctagacaaaaagtggtgaaaccacaatt |
11587242 |
T |
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| Q |
421 |
caaaaaatggaatatacactttcgtcaaaaacaaattattgataatgatctattggccaaattaaatacaggtgatatgagaagaaagactcaccacaat |
520 |
Q |
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| T |
11587243 |
caaaaaatggaatgtacactttcgtcaaaaacaaattattgataatgatctattggccaaattaaatacaggtgatatgagaagaaagactcaccacaat |
11587342 |
T |
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| Q |
521 |
gccaccacaaatttcaataatgtcccttgttctcaaatattgcccaatcctttt |
574 |
Q |
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| T |
11587343 |
gccaccacaaatttcaataatgtcccttgttctcaaatattgcccaatcctttt |
11587396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 557
Target Start/End: Complemental strand, 29837966 - 29837913
Alignment:
| Q |
504 |
gaaagactcaccacaatgccaccacaaatttcaataatgtcccttgttctcaaa |
557 |
Q |
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| T |
29837966 |
gaaacacttaccaaaataccaccacaaatttcaataatatcccttgttgtcaaa |
29837913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 537
Target Start/End: Complemental strand, 30379506 - 30379466
Alignment:
| Q |
497 |
atgagaagaaagactcaccacaatgccaccacaaatttcaa |
537 |
Q |
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| T |
30379506 |
atgagaagaaagactcaccaaaatttcaccacaaatttcaa |
30379466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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