View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11274_low_70 (Length: 211)
Name: NF11274_low_70
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_70 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 14727553 - 14727721
Alignment:
| Q |
19 |
cagagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacatacatagtttgaggttaatggcca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
14727553 |
cagagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacata----ggttgaggttaatggcca |
14727648 |
T |
|
| Q |
119 |
caaccaaaactatgagtaataaattggtaactgagataactcgcactagaagtgacatgacagaagagcaacg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14727649 |
caaccaaaactatgagtaataaattggtatctgagataactcgcactagaagtgacatgacagaagagcaacg |
14727721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 26089059 - 26089120
Alignment:
| Q |
25 |
tgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccaca |
86 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||| || |||||||||||||| |
|
|
| T |
26089059 |
tgaagagtatattattaagttttggagcaaaacctagcatagaaatcactgatgctcccaca |
26089120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 28865754 - 28865830
Alignment:
| Q |
19 |
cagagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacat |
95 |
Q |
| |
|
||||||| |||||||||||||| |||| |||| |||||| ||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
28865754 |
cagagattaagagtatattattcagtgctggatcaaaaccaagcttagaagtcacagatgctcccacacgtgcacat |
28865830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 30648690 - 30648757
Alignment:
| Q |
19 |
cagagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccaca |
86 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||| |||| ||||||| ||||| ||||||| |
|
|
| T |
30648690 |
cagagatcaagagtatattattaagtgttggaacaaaacctagctcagaagtcactgattatcccaca |
30648757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 26086693 - 26086619
Alignment:
| Q |
22 |
agatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacata |
96 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||| |||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
26086693 |
agatcaagagtatattattaagggcaggagcaaaatctagcatggaagtcgctgatgctcccacacttgcacata |
26086619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 4819716 - 4819792
Alignment:
| Q |
20 |
agagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacata |
96 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| | || | |||||| | |||| ||||||| |||||||| |
|
|
| T |
4819716 |
agagatcaagagtatattatcaagtgttggagcaaaacctggcttggaagtcaccaatgcacccacacttgcacata |
4819792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 6611139 - 6611070
Alignment:
| Q |
27 |
aagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacata |
96 |
Q |
| |
|
|||||||| ||||| || ||||||||||||| |||| |||||||| || || |||||||| |||||||| |
|
|
| T |
6611139 |
aagagtatgttattcagagttggagcaaaacctagcttagaagtcactcataatcccacacttgcacata |
6611070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 17292907 - 17292838
Alignment:
| Q |
27 |
aagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacata |
96 |
Q |
| |
|
|||||||| ||||| |||| |||| |||||| |||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
17292907 |
aagagtatcttatttagtgctggatcaaaacctagcttagaagtcatggatgctcccacacttgcacata |
17292838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University