View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11274_low_8 (Length: 578)
Name: NF11274_low_8
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Complemental strand, 31331896 - 31331357
Alignment:
| Q |
18 |
gttcctgctgacccaatcatccttctcagcttaaagctcttaattgcaggtcattgttttctgcctccttttacttgtttctagctcaacgaccaacata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || || |
|
|
| T |
31331896 |
gttcctgctgacccaatcatccttctcagcttaaagctctt----gcaggtcatggttttctgcctccttttacttgttattat--------------ta |
31331815 |
T |
|
| Q |
118 |
acacctatacatgcaccaaa-----agataagatgattttgcaaggagtttgaacttaaaggagggaaggttcatgggaaagaatggaggaaggtaaaat |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
31331814 |
acacctatacatgcaccaaaccaaaagataagatgattttgcaaggagtttgaactttg----ggttctgttcatgggaaagaatggaggaaggaaaaat |
31331719 |
T |
|
| Q |
213 |
caaagtgtttccattgttctgtttttctttagatccacttgcatgttagattaagtgtgatttgggaagccgtgagtggaggaagggaatgagggaaatc |
312 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31331718 |
caaagtctttccattgttctatttttctttagatccacttgcatgttagattaagtgagatttgggaagccgtgagtggaggaaggggatgagggaaatc |
31331619 |
T |
|
| Q |
313 |
tcaagtttggagagagaaaggggtggatgaaatgagaggaatttaacgggatgttataagttatattctgtagctttacagaaaacacacgttaaa---- |
408 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31331618 |
tcaagtttggagagagaaaggagtggatgaaatgagaggaatttaacgggatgttacaagttatattctgtagctttacagaaaacacacgttaaagttg |
31331519 |
T |
|
| Q |
409 |
-acaaatagaagctaagaataattgaatttgatgcaatgtgtaatgttgtttaataaatcaatcttatgtaaataactattatagaatttctctaaaatg |
507 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31331518 |
tatttatagaagctaagaataattgaaattgatgcaatgtgtaatgttgtttaataaatcaatcttatgtaaataagtattatagaatttctctaaaatg |
31331419 |
T |
|
| Q |
508 |
catggtggatattacatgaggggcgaggaatctcccattgcaagattggaaattgtcatttc |
569 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31331418 |
cacgttggatattacatgaggggcgaggaatctcccattgtaagattggaaattgtcatttc |
31331357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 436 - 518
Target Start/End: Original strand, 31321581 - 31321663
Alignment:
| Q |
436 |
ttgatgcaatgtgtaatgttgtttaataaatcaatcttatgtaaataactattatagaatttctctaaaatgcatggtggata |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
31321581 |
ttgatgcaatgtgtaatgttgtttaataaatcaatcttatgtaaataagtattatagaatttctctaaaatgcatgttggata |
31321663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University