View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_low_9 (Length: 573)
Name: NF11274_low_9
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 50 - 324
Target Start/End: Complemental strand, 9970854 - 9970590
Alignment:
| Q |
50 |
aaaaatgtgtgaaatttataaactccatttaaacttatcactagtgaaagtgtgaatagagtttttagtatttcaagctgacttttgccacatcgaaacg |
149 |
Q |
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| T |
9970854 |
aaaaatgtgtgaattttataaactccatttaaacttatcactagtgaaagggtgaatagagtttttagtatttcaagctgacttttgccacatcgaaacg |
9970755 |
T |
|
| Q |
150 |
tgttataaattacaatcattaacccaaacaaccacaaataccactaacactaagcactttacctcaaaagtaaatttgataactttttaagggcaaacaa |
249 |
Q |
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| T |
9970754 |
tgttataaatcacaatcattaac----------acaaataccactaacactaagcactttacctcaaaagtaaatagaataattttttaagggcaaacag |
9970665 |
T |
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| Q |
250 |
gtccaagattgtcctacaaaaatatactaaccccttatatatcctttctcccccacccctttcattcccaaccat |
324 |
Q |
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| T |
9970664 |
gtccaagattgtcctacaaaaatatactaaccctttatatatcctttctcccccacccctttcattccaaaccat |
9970590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 389 - 569
Target Start/End: Complemental strand, 9970523 - 9970343
Alignment:
| Q |
389 |
ggtgacaagagaagatttatacaacgtgatgtgtgcaatggtgcctctatattttgcaatgttagttgcttatggttcagtaaagtgttgcaaaatgttc |
488 |
Q |
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| T |
9970523 |
ggtgacaagagaagatttatacaacgtgatgtgtgcaatggtacctctatattttgcaatgttagttgcttatggttcagtaaagtgttgcaaaatgttc |
9970424 |
T |
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| Q |
489 |
accccagatcaatgttccggcataaaccgattcgtcgcagtttttgcggttccagttctatcttttcacttcatctctctc |
569 |
Q |
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| T |
9970423 |
accccagatcaatgttccggcataaaccgattcgtcgcagtttttgctgttccagttctatcttttcacttcatttctctc |
9970343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 454 - 565
Target Start/End: Original strand, 34970753 - 34970864
Alignment:
| Q |
454 |
ttgcttatggttcagtaaagtgttgcaaaatgttcaccccagatcaatgttccggcataaaccgattcgtcgcagtttttgcggttccagttctatcttt |
553 |
Q |
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|||| |||||||| ||||| || || ||||| ||||| |||||||||||||| ||||||||||| || || ||| ||||||| |||||| |||| || || |
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| T |
34970753 |
ttgcctatggttctgtaaaatggtggaaaatcttcacaccagatcaatgttcaggcataaaccgttttgtagcactttttgcagttccacttctctcatt |
34970852 |
T |
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| Q |
554 |
tcacttcatctc |
565 |
Q |
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| T |
34970853 |
ccacttcatctc |
34970864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 565
Target Start/End: Original strand, 33102005 - 33102072
Alignment:
| Q |
498 |
caatgttccggcataaaccgattcgtcgcagtttttgcggttccagttctatcttttcacttcatctc |
565 |
Q |
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| T |
33102005 |
caatgttccggcataaaccgtttcgtcgcgattttcgcagttcctcttctatcctttcatttcatctc |
33102072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 553
Target Start/End: Original strand, 52716270 - 52716343
Alignment:
| Q |
480 |
aaaatgttcaccccagatcaatgttccggcataaaccgattcgtcgcagtttttgcggttccagttctatcttt |
553 |
Q |
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||||| ||||| |||||||||||||| || |||||||| || ||||| ||||| || |||||| | |||||||| |
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| T |
52716270 |
aaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttccattactatcttt |
52716343 |
T |
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