View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11275_low_1 (Length: 429)
Name: NF11275_low_1
Description: NF11275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11275_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 33274030 - 33273641
Alignment:
| Q |
1 |
atacagaactatttgaggatgcttacaaaccagatttgagcaattgcaaggaagtttttgagtcaggttcacaatccaatatttcatgtggttttggacc |
100 |
Q |
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| T |
33274030 |
atacagaactatttgaggatgcttacaaaccagatttgagcaattgcaaggaagtttttgagtcaggttcacaatccaacatttcatgtggttttggacc |
33273931 |
T |
|
| Q |
101 |
tttctttgatcatttttcttttactcagttattggatatggcgaagaatgatgacataaccgatgcatctagcttggagctttcagaatttgaaagaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33273930 |
tttctttgatcatttttcttttactcagttattggatatggcgaagaatgatgacataaccgatgcatctagcttggagctttcagaatttgaaagaatg |
33273831 |
T |
|
| Q |
201 |
aaggttgaaagacagatatcagcttcactttatgctattaatggagtgcatgaatacatggaaactgttcaagagtctaatgaagccttatgggatcttc |
300 |
Q |
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| T |
33273830 |
aaggttgaaagacagatatcagcttcactttatgctattaatggagtgcatgaatacatggaaactgttcaagagtctaatgaagccttatgggatcttc |
33273731 |
T |
|
| Q |
301 |
cacccttgtgctccttgttctgtt-aaacttttataaggtctaaattaatgaatctgcaaatgtttcttccaagtattattgcagcccta |
389 |
Q |
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| T |
33273730 |
cacccttgtgctccttgttctgttaaaacttttataaggtctaaattaatgaatctgcaaatgtttcttccaaatattattgcagcccta |
33273641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 312
Target Start/End: Original strand, 10030635 - 10030766
Alignment:
| Q |
181 |
tttcagaatttgaaagaatgaaggttgaaagacagatatcagcttcactttatgctattaatggagtgcatgaatacatggaaactgttcaagagtctaa |
280 |
Q |
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|||||||||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||| || || || |||||| ||| |||||| || | || |
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| T |
10030635 |
tttcagaatttgaaaggatgaaagttgaaaggcaaatatcagcttcactttatgcaattaatggtgttcaagagtacatgaaaaatgttcaggattgcaa |
10030734 |
T |
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| Q |
281 |
tgaagccttatgggatcttccacccttgtgct |
312 |
Q |
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|||||| |||| ||||| |||| ||||||| |
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| T |
10030735 |
tgaagctcaatggaatctttcacctttgtgct |
10030766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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