View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11276_high_10 (Length: 434)
Name: NF11276_high_10
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 46677908 - 46677655
Alignment:
| Q |
1 |
tatctccagaggattgactaaagatatcaattaagggagtggaaccaccgtgagttaaccaatccaaaagaccccattttgctgccaattttgaatcaaa |
100 |
Q |
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| T |
46677908 |
tatctccagaggattgactaaagatatcaattaagggagtggaaccaccgtgagttaaccaatccaaaagaccccattttgctgccaattttgaatcaaa |
46677809 |
T |
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| Q |
101 |
cttttgttcattctttggtgttccggtgcccaatgagattattagaaaacggctatactccatgggcttgatggcatagaagtcatcattctcattgatt |
200 |
Q |
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| T |
46677808 |
cttttgttcattctttggtgttccggtgcccaatgagattattagaaaacggctatactccatgggcttgatggcatagaagtcattattctcattgatt |
46677709 |
T |
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| Q |
201 |
atctgcgtcgttacttcattcacggctactaaagcctagaacattgatcatcac |
254 |
Q |
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| T |
46677708 |
atctgcgtcgttacttcattcacggctactaaagcctagaacattgatcatcac |
46677655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 46681845 - 46681635
Alignment:
| Q |
12 |
gattgactaaagatatcaattaagggagtggaaccaccgtgagttaaccaatccaaaagaccccattttgctgccaattttgaatcaaacttttgttcat |
111 |
Q |
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| T |
46681845 |
gattgactaaacatgtcgattaagggagtcgaaccaccgtgagttaaccaatccagcagaccccattttgctgccattttcgcattgaacttttgttcat |
46681746 |
T |
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| Q |
112 |
tctttggtgttccggtgcccaatgagattattagaaaacggctatactccatgggcttgatggcatagaagtcatcattctcattgattatctgcgtcgt |
211 |
Q |
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| T |
46681745 |
tcttgggtgtcccagttcccagtgagattatcaagaaacggctatattccattggcttgatggcatagaagtcattattctgattaattatctgatttgt |
46681646 |
T |
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| Q |
212 |
tacttcattca |
222 |
Q |
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| T |
46681645 |
tacttcattca |
46681635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 324 - 417
Target Start/End: Complemental strand, 46677587 - 46677494
Alignment:
| Q |
324 |
ctttgtatgtaacttttattatataattatttaccggattatttgcacaaacaccaccatcaatgaggttgaactcacgtacgttgccttctgt |
417 |
Q |
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| T |
46677587 |
ctttgtatgtaacttttattatataattatttaccggattatttgcacaaacaccaccatcaatgaggttgaactcacgtacgttgccttctgt |
46677494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 46681533 - 46681471
Alignment:
| Q |
355 |
taccggattatttgcacaaacaccaccatcaatgaggttgaactcacgtacgttgccttctgt |
417 |
Q |
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| T |
46681533 |
taccggattatttgcacaaacacctccatcaataaggttgaattcatgtgtgttgccttctgt |
46681471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 399
Target Start/End: Original strand, 6090195 - 6090239
Alignment:
| Q |
355 |
taccggattatttgcacaaacaccaccatcaatgaggttgaactc |
399 |
Q |
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| T |
6090195 |
taccggattatttgcacaaacaccaccatcaatgagattgaactc |
6090239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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