View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11276_high_12 (Length: 414)
Name: NF11276_high_12
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 31496977 - 31497373
Alignment:
| Q |
15 |
ccttctactttgttgggattaatgacatggtgtgtaaggaatttatgatagtttagtcnnnnnnngctagttacttagcttcatcatttata----tata |
110 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
31496977 |
ccttctactttgttgggattaatgacatggtgtgttaggaatttatgatagtttagtctttttttgctagttacttagcttcatcatttatatatatata |
31497076 |
T |
|
| Q |
111 |
tcatagattttactactacaaatgaatggattacaaagactccaaatggatttcgtattctttgaactatatacaaatgaagtaggaagctctagtcttc |
210 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31497077 |
tcatagattttactactacaaatgaatgaattacaaagactccaaatggatttcatattctttgaactatatacaaatgaagtaggaagctctagtcttc |
31497176 |
T |
|
| Q |
211 |
aatcaaatttacaattcctgtgaaattggaactttggtagaacttccaattctaaatactttgcaatatatttgttggttgcttcacttggatgcacact |
310 |
Q |
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| T |
31497177 |
aatcaaatttacaattcctatgaaattggaactttggtagaacttccaattctaaatactttgcaatatatttgttggttgcttcacttggatgcacact |
31497276 |
T |
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| Q |
311 |
gtcccaaaatacatattttgaagcgtcatcacatacaggtgtgagttcattacacaatggagttacttcaaatgtcccagttccacaacaccctttg |
407 |
Q |
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| T |
31497277 |
gtcccaaaatacatattttgaagcgtcatcacatacaggtgtgagttcattacacaatggagttacttcaaatgtgccagttccacaacaccctttg |
31497373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 115 - 407
Target Start/End: Original strand, 40845362 - 40845656
Alignment:
| Q |
115 |
agattttactactacaaatgaatggattacaaagactcc--aaatggatttcgtattctttgaactatatacaaatgaagtaggaagctctagtcttcaa |
212 |
Q |
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| T |
40845362 |
agattttactaatacaaatgaagagattaaaaagactccccaaatggatttcatattctttgtactatatacaaatgaagttggaagctctagacttcaa |
40845461 |
T |
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| Q |
213 |
tcaaatttacaattcctgtgaaattggaactttggtagaacttccaattctaaatactttgcaatatatttgttggttgcttcacttggatgcacactgt |
312 |
Q |
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||||||||||||||||| |||||||| ||||| |||||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||||||| |
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| T |
40845462 |
tcaaatttacaattcctatgaaattgaaacttgggtagaacttccaattctaagtatttagcaatatacttgttggttgcttcacttggatgcacactgt |
40845561 |
T |
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| Q |
313 |
cccaaaatacatattttgaagcgtcatcacatacaggtgtgagttcattacacaatggagttacttcaaatgtcccagttccacaacaccctttg |
407 |
Q |
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| T |
40845562 |
cccaaaatacatatttagaagcgtcatcacatacaggtgtgagttcattgcacaatggagttacttcaaatgtgccagttccgcaatatcctttg |
40845656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 117 - 407
Target Start/End: Original strand, 31527836 - 31528123
Alignment:
| Q |
117 |
attttactactacaaatgaatggattacaaagactcc-aaatggatttcgtattctttgaactatatacaaatgaagtaggaagctctagtcttcaatca |
215 |
Q |
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||||| ||||||||||| |||| ||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||| | |||| |
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| T |
31527836 |
atttttctactacaaattaatgaattacaaggactcccaaatggatttcatattctttgtactatatacaaatgaagttggaagctctagac----atca |
31527931 |
T |
|
| Q |
216 |
aatttacaattcctgtgaaattggaactttggtagaacttccaattctaaatactttgcaatatatttgttggttgcttcacttggatgcacactgtccc |
315 |
Q |
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| T |
31527932 |
aatttacaattcctgtgaaactggaacttgggtagaacttccaattccatgtatttagcaatatacttgttggttgcttcacttggatgcacactgtccc |
31528031 |
T |
|
| Q |
316 |
aaaatacatattttgaagcgtcatcacatacaggtgtgagttcattacacaatggagttacttcaaatgtcccagttccacaacaccctttg |
407 |
Q |
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| T |
31528032 |
aaaatacatattttgaagcatcatcacacacaggtgtgagctcattacacaatggagttacttcaaatgtgccagttccacaacatcctttg |
31528123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 40845210 - 40845255
Alignment:
| Q |
27 |
ttgggattaatgacatggtgtgtaaggaatttatgatagtttagtc |
72 |
Q |
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||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
40845210 |
ttgggattagagacatggtgtgttaggaatttatgatagtttagtc |
40845255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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