View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11276_high_2 (Length: 803)
Name: NF11276_high_2
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 638; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 54 - 785
Target Start/End: Complemental strand, 33346107 - 33345376
Alignment:
| Q |
54 |
agaacaggattttgcttctactacaatacaagggtttatcacaccaaacagaacaagaacnnnnnnntggtgaacatccacatccaccattcatacacag |
153 |
Q |
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| T |
33346107 |
agaacaggatttggcttctactacaatacaa---tataccacaccaaacagtacaagaacaaaaaaatggtgaacatccacatctaccgttcatacacag |
33346011 |
T |
|
| Q |
154 |
tgacaccttcagagaaaacaccaaccaccacactctctctttccctctgtgatcaactcaaactccctaatcatggataccaactttacctcttcacaaa |
253 |
Q |
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| T |
33346010 |
taacaccttcagagaaaacaccaaccaccacactctctctttccctctgtgatcaactcaagctccctaatcatggataccaactttacctcttcacaaa |
33345911 |
T |
|
| Q |
254 |
caaaaaccattc---ttcatcactcatctcttcaacaaacattctcataacctctctctccaaaacactcactcactactatccctttgcaggtagatta |
350 |
Q |
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| T |
33345910 |
caaaaaccattcatcttcatcactcatctcttcaacaaacattctcataacctctctctccaaaacactcactcactactatccctttgcaggtagatta |
33345811 |
T |
|
| Q |
351 |
agctggatcaaaccacaaaaccacttactacaacttcattgcaacaacaaaggtgttcaattcttagaagccacgtgtgatatcactttaaaagattttg |
450 |
Q |
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| T |
33345810 |
agctggatcaaaccacaaaaccacttactacaacttcattgcaacaacaaaggtgttcaattcttagaagccacgtgtgatatcactttaaaagattttg |
33345711 |
T |
|
| Q |
451 |
gtagttttgattctacacatgttatccaaaaacttgttccaaagattaactatgatgttccagttgaagatcttcctttgttggttgttcagttcaccaa |
550 |
Q |
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| T |
33345710 |
gtagttttgattctacacatgttgtccaaaaacttgttccaaagattaactatgatgttccagttgaagatcttcctttattggttgttcagttcaccaa |
33345611 |
T |
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| Q |
551 |
gtttccttgtgggtcactcactcttggtcttgctatgggtcgttctgttcttgatggttcttctgctggtagtttcattagctcatgggctaaacttgcc |
650 |
Q |
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| T |
33345610 |
gtttccttgtgggtcactcactcttggtctttctatgggtcgttctgttcttgatggttcttctgctggtagtttcattagctcatgggctaaacttgcc |
33345511 |
T |
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| Q |
651 |
aaaggtgagagtttagattcaagtttgataccatttctagataatacattgttggattcaaaaatccttcatttaccaccacgttttcatcatcatgagt |
750 |
Q |
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| T |
33345510 |
aaaggtgagagtttagattcaagtttgataccatttctagataaaacattgttggattcaaaaatccttcatttaccaccacgttttcatcatcatgagt |
33345411 |
T |
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| Q |
751 |
tttctccaccacccctttgggaaaatagtagtaat |
785 |
Q |
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| T |
33345410 |
tttctccaccacccctttgggaaaatagtagtaat |
33345376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 363 - 782
Target Start/End: Complemental strand, 33334204 - 33333782
Alignment:
| Q |
363 |
ccacaaaaccacttactacaacttcattgcaacaacaaaggtgttcaattcttagaagccacgtgtgatatcactttaaaagattttggtagttttgatt |
462 |
Q |
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| T |
33334204 |
ccacaaaaccacttactacaacttcattgcaacaataaagtacat-acttcttagaagccacgtgtgatgttactttcaaagatttaggtagttttgatt |
33334106 |
T |
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| Q |
463 |
ctacacatgttatccaaaaacttgttccaaagattaactatgatgttccagttgaagatcttcctttgttggttgttcagttcaccaagtttccttgtgg |
562 |
Q |
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| T |
33334105 |
ccacacatgttgtcaaaaaacttgttccaaaaattaactatgatgttccgattgaagatgttcctttgttggctgtccaattcaccaagttttcatgtgg |
33334006 |
T |
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| Q |
563 |
gtcactcactcttggtcttgctatgggtcgttctgttcttgatggttcttctgctggtagtttcattagctcatgggctaaacttgccaaa---ggtgag |
659 |
Q |
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| T |
33334005 |
gtccctcactcttggtcttgctatgtgtcgtgccgtacttgatggggcctcagctgctaatttcatcaactcatgggcaaaacttactaaaattagaaag |
33333906 |
T |
|
| Q |
660 |
agtttagattcaagtttgatacca-tttctagataatacattgttggattcaaaaatccttcatttaccaccacgttttcatcatcatgagttttctcca |
758 |
Q |
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| T |
33333905 |
actttagattcaagtttgataccattttcttgataaaactttgttagattcaaaaatccttcatttaccaccacgttttcatcatcatgagttttctcca |
33333806 |
T |
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| Q |
759 |
ccacccctttgggaaaatagtagt |
782 |
Q |
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| T |
33333805 |
ccacctctttgggaaattagtagt |
33333782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 33334365 - 33334282
Alignment:
| Q |
158 |
accttcagagaaaacaccaaccaccacactctctctttccctctgtgatcaactcaaactccctaatcatggataccaacttta |
241 |
Q |
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|||||| |||| |||||||| |||||||||||||||||||||||| || ||| |||| ||||||||||||| |||||| ||||| |
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| T |
33334365 |
accttccgagacaacaccaagcaccacactctctctttccctctgcgaacaaatcaagctccctaatcatgaataccagcttta |
33334282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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