View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11276_high_21 (Length: 290)
Name: NF11276_high_21
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 42330722 - 42330846
Alignment:
| Q |
18 |
catttcagaataaaactaagattcaaaccaagttccaagattggtaacaaaacaagaaggtggagctctccttttactataaaccattctgctcctcatt |
117 |
Q |
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| T |
42330722 |
catttcagaataaaactaagattcaaaccaagttccaagattggtaacaaaacaagaaggtggagctctccttttactataaaccattctgctcctcatt |
42330821 |
T |
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| Q |
118 |
cctttgcttaaaataaaatgttact |
142 |
Q |
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| T |
42330822 |
cctttgcataaaataaaatgttact |
42330846 |
T |
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Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 42331596 - 42331681
Alignment:
| Q |
142 |
tactatgagttatggaaggagtatgtttttatgttccttttgtattcttttgttgagaaagggagttgcgtgtgtgcatgcatatg |
227 |
Q |
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| T |
42331596 |
tactatgagttatggaaggagtatgcttttatgttccttttgtattcttttgttgagaaagggagttgcgtgtgtgcatgcatatg |
42331681 |
T |
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