View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11276_high_3 (Length: 658)
Name: NF11276_high_3
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 155 - 639
Target Start/End: Complemental strand, 29345048 - 29344564
Alignment:
| Q |
155 |
aatatagaaattaatatagacatacatagtgtagaaacgacacaaataaaaataaaacatgaagattcttgaataaagaatcacaaagaggaaacaattt |
254 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29345048 |
aatatagaaattaatatagacatacatggtgtagaaacgacacaaataaaaataaaacatgaagattcttgaataaagaatcacaaagaggaaacagttt |
29344949 |
T |
|
| Q |
255 |
cttaaaattcttaagaaatgataaaacattgaaagaaataaggagatttgtgaaaaaacgatgcagaaatgcgcagggaagaagatgaatactcatcgag |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29344948 |
cttaaaattcttaagaaatgataaaacattgaaagaaataaggagatttgtgaaaaaacgatgcagaaatgcgcagggaagaagatgaatactcatcgag |
29344849 |
T |
|
| Q |
355 |
atgaaggaggtatcaaatctagttgcaactgataccaattaaaatgatgaacttgatccatagataagaaatcaataaagcattctacactaaataaaaa |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29344848 |
atgaaggaggtatcaaatctagttgcaactgataccaattaaaatgatgagcttgatccatagataagaaatcaataaagcattctacactaaataaaaa |
29344749 |
T |
|
| Q |
455 |
accaaagaattgaaagagaaatcttaatattcacaaatctaagtgttacaatgcggaacaacacttacaaataatatcacaaaatacatgaatatttaaa |
554 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29344748 |
accaatgaattgaaagataaatgttaatattcacaaatctaagtgttacaatgcggaacaacacttacaaataatatcacaaaatacatgaatatttaaa |
29344649 |
T |
|
| Q |
555 |
gtgatgtaggttggcaaatttacaccacaaattattctgagtaattagtaaaaaattaacctacgtcaaaatttagggcatccca |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29344648 |
gtgatgtaggttggcaaatttacaccacaaattattctgagtaattagtaaaaaattaacctacgtcaaaatttagggtatccca |
29344564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 29345371 - 29345240
Alignment:
| Q |
16 |
aagaataagaactcggttttcactttgatggatgaagtc--ggggctaagattattactctgatacannnnnnncttggtgttcgtgaatccaccattaa |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
29345371 |
aagaataagaactcggttttcacttcgatggatgaagtataggggctaagattattactctgatacatttttttcttggtgttcgtgaatccatcattaa |
29345272 |
T |
|
| Q |
114 |
ctctttcagcagaactcttgatcaaaagaaaa |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
29345271 |
ctctttcagcagaactcttgatcaaaagaaaa |
29345240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University