View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11276_high_7 (Length: 543)
Name: NF11276_high_7
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 39313124 - 39312596
Alignment:
| Q |
1 |
tgtgtgtctttcgttagtcaatttgtgcacgaaattactaacagaagataaatttagggatatttcagtactgttgatacattcagagattataatgaca |
100 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39313124 |
tgtgtgtcttccattagtcaatttgtgcacgaaattactaacagaagataaatttagggatatttcagtaatgttgatacattcagagattataatgaca |
39313025 |
T |
|
| Q |
101 |
ccaccttgctcgttgtgggactaaattgacttatctggatggtaaatgtgttgatgatatatgtaaaaaatgtaggatgggacagaagtgcagcttaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39313024 |
ccaccttgctcgttgtgggactaaattgacttatctggatggtaaatgtgctgatgatatatgtaaaaaatgtaggatgggacagaagtgcagcttaagt |
39312925 |
T |
|
| Q |
201 |
cagtggcattgcagaaatatgtatctgcagacaatgggggaggaatgaatgtgacagttgacagggatgccccatcttcatgggaagcgttcagggtaag |
300 |
Q |
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| T |
39312924 |
cagtgaaattgcagaagtatgtatctgcagacaatgggggaggaatgaatgtgacagttgatagggatgccccatcttcatgggaaacattcagagtaag |
39312825 |
T |
|
| Q |
301 |
atctaaagttgctatggtcttctattttaattttctatccagcattatatgttgcaatgatttgattttttcagattaaggattatgtgtctaa-ttgtc |
399 |
Q |
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||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39312824 |
atctaaaattgccattgtcttctattttaattttctatccagcattatatgttgcaacgatttgattttttcagattaaggattatgtgtctaatttgtc |
39312725 |
T |
|
| Q |
400 |
agtccatttcctgtgcttactttatccatttcacggtttcatacctaaatcagttgaatttctgaatgtataaacgttgttgattgtgaacttcaatatc |
499 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39312724 |
agtccatttcctgtgcttactttatccatttcacagtttcatacctaaatcagttgaatttctgaatgtataaacgttgttgattgtgaacttcaatatg |
39312625 |
T |
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| Q |
500 |
attctaatttgaagttgttagagtgatgt |
528 |
Q |
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| T |
39312624 |
attctaatttgaagttgttagagtgatgt |
39312596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 10092592 - 10092546
Alignment:
| Q |
3 |
tgtgtctttcgttagtcaattt-gtgcacgaaattactaacagaaga |
48 |
Q |
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|||||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
10092592 |
tgtgtctttcgttagtcaatttggtccacaaaattactaacagaaga |
10092546 |
T |
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