View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11276_low_11 (Length: 429)
Name: NF11276_low_11
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 24129976 - 24129552
Alignment:
| Q |
1 |
agatcaaaatcaagactgatagtattaccattattgctgtcaaattcggcttacacttaaaattgactaatatgtggctaccagattaacctaatccact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24129976 |
agatcaaaatcaagactgatagtattaccattattgctgtcaaattcggcttacacttaaaattgactaatatgtggcaaccagattaacctaatccact |
24129877 |
T |
|
| Q |
101 |
atagcagttacagatctttagtccttaacctattccaactatagcagttacaaagcttcactccttgaaacattttcaaaagagtcaagcagtttccacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24129876 |
atagcagttacagatctttagtccttaacctattccaactatagcagttacaaagcttcactccttgaaacattttcaaaagagtcaagcagtttccacc |
24129777 |
T |
|
| Q |
201 |
nnnnnnnnnnnnnctctcccggtact-----------gagtagtacatctaacatgcatgcattgttgcatgtaaatatgctaaacgaaatacaatatac |
289 |
Q |
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||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24129776 |
aaaaaaagaaaaactctcccggtactatgtattgatcgactagtacatctaacatgcacacattgttgcatgtaaatatgctaaacgaaatacaatatac |
24129677 |
T |
|
| Q |
290 |
atatgattgaacnnnnnnnggccagaagtttcggccttaccaatgctaacaagcatttcaattggtactccgtattgcctgcatttgaacttagcagata |
389 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||| |
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| T |
24129676 |
atatgattgaacaaaaaaaggccagaagtttcggccttaccaatgctaacaagcatttcaattggtactccataatgcctgcatttgaacttcgcagata |
24129577 |
T |
|
| Q |
390 |
tgaagcaattttcttggatattttt |
414 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
24129576 |
tgaagcaattttcttggatattttt |
24129552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 24147961 - 24147793
Alignment:
| Q |
29 |
cattattgctgtcaaattcggcttacacttaaaattgactaatatgtggctaccagattaacctaatccactatagcagttacagatctttagtccttaa |
128 |
Q |
| |
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|||||||| |||||||||||| |||| |||||||||||||||||||| | ||||||||||| |||||| ||| ||||||| | ||| ||||||||| |
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| T |
24147961 |
cattattgttgtcaaattcggtttac--ttaaaattgactaatatgtgctaagaagattaacctagtccactgtagaagttacatagcttcagtccttaa |
24147864 |
T |
|
| Q |
129 |
cctattccaactatagcagttacaaagcttcactccttgaaacattttcaaaagagtcaagcagtttccacc |
200 |
Q |
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||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |
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| T |
24147863 |
cctattcca-ctatagcagttacaaagcttcattccctgaaacattttcaaaagagtgaagcagtttccacc |
24147793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 24147748 - 24147628
Alignment:
| Q |
237 |
tctaacatgcatgcattgttgcatgtaaatatgctaaacgaaatacaatatacatatgattgaacnnnnnnnggccagaagtttcggccttaccaatgct |
336 |
Q |
| |
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|||| ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||| || |||| |||| ||||||||| |
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| T |
24147748 |
tctagcatgcatgcattgttgcatttaaacatgctaaatgaaatacaatatacatatgattgaacaaaaaaacgcctgagttttcagcctcaccaatgct |
24147649 |
T |
|
| Q |
337 |
aacaagcatttcaattggtac |
357 |
Q |
| |
|
||||||||| ||||||||||| |
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|
| T |
24147648 |
aacaagcatgtcaattggtac |
24147628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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