View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11276_low_13 (Length: 409)
Name: NF11276_low_13
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 5 - 368
Target Start/End: Original strand, 6103900 - 6104263
Alignment:
| Q |
5 |
cacagctttccacctgcttcatcagcgaatgctannnnnnnccctctacgcactacatcttgtggaggtgagactacattttgtggagttgaagaactac |
104 |
Q |
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| T |
6103900 |
cacagctttccacctgcttcatcagcgaatgctatttttttccctttacgcactacatcttgtggaggtgagactacattttgtggagttgaagaactac |
6103999 |
T |
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| Q |
105 |
tgtcggctaatttctgcagttgatcaatatcagtaattagccaaacaagaaacagacaactaaaccacacaaagctgatagtattcaagagttaagaagc |
204 |
Q |
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| T |
6104000 |
tgtcggctaatttctgcagttgatcaatatcagtaattagccaaacaagaaatagacaactaaaccacacaaagctgatagtattcaagagttaagaagc |
6104099 |
T |
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| Q |
205 |
acaaacggcagaaataacattgacactggtagtaacttgattaaatgcaaccacatgtgttggtgttgtgttagtattggagactgaacacattcaacat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6104100 |
acaaacggcagaaataacattgacactggtagtaacttgattaaatgcaaccacatttgttggtgttgtgttagtgttggagactgaacacattcaacat |
6104199 |
T |
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| Q |
305 |
gaagtgtcaatgtgcttcaattcaagagtatggtagaggatgaactaaccattattttacagaa |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6104200 |
gaagtgtcaatgtgcttcaattcaagagtatggtagagaatgaactaaccattattttacagaa |
6104263 |
T |
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