View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11276_low_14 (Length: 367)
Name: NF11276_low_14
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 351
Target Start/End: Complemental strand, 34915701 - 34915355
Alignment:
| Q |
6 |
aggagcacagactcccgctccggtttttggaaatactggtattgggcagtcgggatttggagaactacttgaaaaacttgaggccataacagccaggtta |
105 |
Q |
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| T |
34915701 |
aggatcacagactcccgctccggtttttggaaatactggtattgggcagtcgggatttggagaactacttgaaaaacttgaggccataacagccaggtta |
34915602 |
T |
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| Q |
106 |
cagacattgtttagtcaaccttgagtagctagttactca-ctacaactgaactgatgtagatagatagatagatatatttccttttaaatttttgcttat |
204 |
Q |
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| T |
34915601 |
cagacattgtttagtcaaccttgagtagctagttactcagctacaactgaactgatgtagatagatagatagatatatttccttttaaatttttgcttat |
34915502 |
T |
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| Q |
205 |
ttcaagtgacagtggggatggaaagcttcaaagtgtctatttgcctgcctgtgaaattttgaaaggcaaagctaccagctgttattatcgattttggttc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915501 |
ttcaagtgacagtggggatggaaagcttcaaagtgtctatttgcctgcctgtgaaattctgaaaggcaaagctaccagctgttattatcgattttggttc |
34915402 |
T |
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| Q |
305 |
atatgttgcccaatttttattgttgaatttcttgcacagtttgaaac |
351 |
Q |
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| T |
34915401 |
atatgttgcccaatttttattgttgaatttcttgcacagtttgaaac |
34915355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 34909469 - 34909418
Alignment:
| Q |
16 |
actcccgctccggtttttggaaatactggtattgggcagtcgggatttggag |
67 |
Q |
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| T |
34909469 |
actcctgctccgggttttggaaatgctgatattgggcagtcgggatttggag |
34909418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 312
Target Start/End: Complemental strand, 34920487 - 34920353
Alignment:
| Q |
180 |
tatttccttttaaattttt-gcttatttcaagtgacagtgg--ggatggaaagcttcaaagtgtctatttgcctgcctg-tgaaattttgaaaggcaaag |
275 |
Q |
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||||||| ||||||||||| |||||||| ||||||||||| |||||||||| |||||||| || ||| ||||| ||||||| |||||||||| | |
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| T |
34920487 |
tatttccctttaaattttttgcttatttaaagtgacagtgtttggatggaaagtttcaaagtcact--ttggttgcctcatgaaattctgaaaggcaagg |
34920390 |
T |
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| Q |
276 |
ctaccagctgttattatcgattttggttcatatgttg |
312 |
Q |
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| T |
34920389 |
ctaccggccattattattgattttggttcaaatgttg |
34920353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 34906075 - 34906014
Alignment:
| Q |
6 |
aggagcacagactcccgctccggtttttggaaatactggtattgggcagtcgggatttggag |
67 |
Q |
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|||| ||||||||||| ||| | ||||||| |||||||||||||||||| |||||||||| |
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| T |
34906075 |
aggatcacagactcccactcaagcatttggaagtactggtattgggcagtcaggatttggag |
34906014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 34895541 - 34895505
Alignment:
| Q |
31 |
tttggaaatactggtattgggcagtcgggatttggag |
67 |
Q |
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| T |
34895541 |
tttggaagtactggtattgggcagtcaggatttggag |
34895505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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