View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11276_low_15 (Length: 364)
Name: NF11276_low_15
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 33461878 - 33461526
Alignment:
| Q |
1 |
tgtgattgttgtgttcatttctgttgtgatgcatgtgccttatgccaagaacatgctgaacttaaagcaagagggtttaacccttccaaaggttggattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33461878 |
tgtgattgttgtgttcatttctgttgtgatgcatgtgccttatgccaagaacatgctgaacttaaagcaagagggtttaacccttccaaaggttggattg |
33461779 |
T |
|
| Q |
101 |
ggccacctcatgctcctcctcgtatgcctcccaccatgtttcgatgatccatctgcaattataatacatgcatcaatttagagttaatcaatttctgtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33461778 |
ggccacctcatgctcctcctcgtatgcctcccaccatgtttcgatgatccatctgcaactataatacatgcatcaatttagagttaatcaacttctgtca |
33461679 |
T |
|
| Q |
201 |
tagtcatgttacatctataatttgcagcagtactattaattaacagtgcctttttctatgcttattactacttagtatgaccgtgataatgtatttatta |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33461678 |
tagtcatgttatatctataatttgcagcagtactattaattaacagtgcctttttctatgcttattactacttagtatgaccgtgataatgtatttatta |
33461579 |
T |
|
| Q |
301 |
cagtatactgtcatttagaaattcaactgtgatgagtaatcttattggttcat |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33461578 |
cagtatactgtcatttagaaattcaactgtgatgagtaatcttattggttcat |
33461526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University