View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11276_low_16 (Length: 347)
Name: NF11276_low_16
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_low_16 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 17293706 - 17294052
Alignment:
| Q |
1 |
taaatatgctcaaatataatttactcgtaagagaaacttctaaatatacgacaggaggttacctgtggctcgatacatagcgcggaaatgtgcaaaatgg |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17293706 |
taaatatgctcgaatataatttactcgtaagagaaacttctaaatatacgacaggaggttacctgtggctcgatacatagcgcggaaatgtgcaaaatgg |
17293805 |
T |
|
| Q |
101 |
tgttgtcatcctcatccttgtgatttagtatgttatattcaaactctctagcacctctttcgatatttttcctaagaaagcaaacaaggagatgaagagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17293806 |
tgttgtcatcctcatccttgtgatttagtatgttatattcaaactctctagcacctctttcgatatttttcctaagaaagcaaacaaggagatgaagagc |
17293905 |
T |
|
| Q |
201 |
ctcaaagtttttatttttcaccgcaatatgcagtgcagtttcccctcccacagtcacatcttgaatggaatccggacaagcaaaaagcaatttagctaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
17293906 |
ctcaaagtttttatttttcaccgcaatatgcagtgcagtttcaccccccacagtcacatcttgaatggaattcggacaagcaaaaagtaatttagctaaa |
17294005 |
T |
|
| Q |
301 |
agttcaacctcaccaatttgacttgcaaaatgaagaggagttaagcc |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17294006 |
agttcaacctcaccaatttgacttgcaaaatgaagaggagttaagcc |
17294052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 6612165 - 6612219
Alignment:
| Q |
289 |
aatttagctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagtta |
343 |
Q |
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| T |
6612165 |
aatttagctaaaagatcaacctcaccaatttgacttgcaaaatgaagaggagtta |
6612219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 56 - 341
Target Start/End: Complemental strand, 27712705 - 27712420
Alignment:
| Q |
56 |
aggttacctgtggctcgatacatagcgcggaaatgtgcaaaatggtgttgtcatcctcatccttgtgatttagtatgttatattcaaactctctagcacc |
155 |
Q |
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||||||||| ||||||| |||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||| | ||||||| |||| ||| ||| | |
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| T |
27712705 |
aggttacctttggctcgttacatagcgctgaaatgtgcagaatagtgttgtcatcctcatccttctgatttagtgttctatattctaactttcttgcatc |
27712606 |
T |
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| Q |
156 |
tctttcgatatttttcctaagaaagcaaacaaggagatgaagagcctcaaagtttttatttttcaccgcaatatgcagtgcagtttcccctcccacagtc |
255 |
Q |
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||| | ||||| || ||||||| |||||||| |||| ||| |||| || || |||||||||| || |||||||| ||||| || || | ||||||| |
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| T |
27712605 |
tctcttcctatttctcttaagaaaacaaacaagaagatcaagggccttgaatttgttatttttcaaagctatatgcagagcagtctcacccctcacagtc |
27712506 |
T |
|
| Q |
256 |
acatcttgaatggaatccggacaagcaaaaagcaatttagctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagt |
341 |
Q |
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|| |||| ||| ||||| |||||||||| ||| || ||||||||||| ||||| || || | ||||||||||||||| ||||||| |
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| T |
27712505 |
acgtcttcaatagaatcaggacaagcaacaaggaacttagctaaaaggtcaacttcttcattatgacttgcaaaatgaggaggagt |
27712420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 88 - 341
Target Start/End: Complemental strand, 24508747 - 24508494
Alignment:
| Q |
88 |
atgtgcaaaatggtgttgtcatcctcatccttgtgatttagtatgttatattcaaactctctagcacctctttcgatatttttcctaagaaagcaaacaa |
187 |
Q |
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|||||||||||||||||| || ||||||||| |||||||| || |||||||| || | || |||||||| | | |||||||| | ||||||||||| | |
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| T |
24508747 |
atgtgcaaaatggtgttgccaatctcatccttttgatttagaattttatattctaatttccttgcacctctcttggtatttttcttgagaaagcaaacta |
24508648 |
T |
|
| Q |
188 |
ggagatgaagagcctcaaagtttttatttttcaccgcaatatgcagtgcagtttcccctcccacagtcacatcttgaatggaatccggacaagcaaaaag |
287 |
Q |
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|||| | |||| ||||| | | ||||||| ||| |||||||||| |||||| | || | |||||| || |||| |||||| || ||||||||||| || |
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| T |
24508647 |
ggagtttaagaacctcatactggttattttgcacagcaatatgcaatgcagtcttacccctcacagttacgtcttcaatggattctggacaagcaaagag |
24508548 |
T |
|
| Q |
288 |
caatttagctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagt |
341 |
Q |
| |
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| ||||||||||| |||| |||||||| ||||||||||||||||||||||||| |
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| T |
24508547 |
gagtttagctaaaatttcatcctcaccattttgacttgcaaaatgaagaggagt |
24508494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 15329331 - 15329278
Alignment:
| Q |
294 |
agctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagttaagcc |
347 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15329331 |
agctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagcc |
15329278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 15509700 - 15509647
Alignment:
| Q |
294 |
agctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagttaagcc |
347 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15509700 |
agctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagcc |
15509647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 28865427 - 28865374
Alignment:
| Q |
294 |
agctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagttaagcc |
347 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28865427 |
agctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagcc |
28865374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 14726702 - 14726651
Alignment:
| Q |
296 |
ctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagttaagcc |
347 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
14726702 |
ctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagcc |
14726651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 26088556 - 26088519
Alignment:
| Q |
306 |
aacctcaccaatttgacttgcaaaatgaagaggagtta |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
26088556 |
aacctcaccaatttgacttgcaaaatgaagaggagtta |
26088519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 29552190 - 29552137
Alignment:
| Q |
294 |
agctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagttaagcc |
347 |
Q |
| |
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||||||||| |||||||| |||||||| |||||| ||||||||||||| ||||| |
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| T |
29552190 |
agctaaaaggtcaacctctccaatttggcttgcataatgaagaggagtcaagcc |
29552137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 344
Target Start/End: Original strand, 31075663 - 31075797
Alignment:
| Q |
210 |
tttatttttcaccgcaatatgcagtgcagtttcccctcccacagtcacatcttgaatggaatccggacaagcaaaaagcaatttagctaaaagttcaacc |
309 |
Q |
| |
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||||||||| | |||| ||| |||||||| || || | |||||| |||||||| || |||| |||||| |||| || || ||||||| ||| ||||| |
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|
| T |
31075663 |
tttattttttatagcaacatgaagtgcagtctcacccctcacagtaacatcttggatcgaatttggacaaacaaataggaaattagctacaaggtcaact |
31075762 |
T |
|
| Q |
310 |
tcaccaatttgacttgcaaaatgaagaggagttaa |
344 |
Q |
| |
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|| ||| |||||| |||| ||||||||||||||| |
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| T |
31075763 |
tctccattttgacaagcaatatgaagaggagttaa |
31075797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 30648263 - 30648226
Alignment:
| Q |
306 |
aacctcaccaatttgacttgcaaaatgaagaggagtta |
343 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
30648263 |
aacctcaccattttgacatgcaaaatgaagaggagtta |
30648226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 4819235 - 4819163
Alignment:
| Q |
271 |
tccggacaagcaaaaagcaatttagctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagtta |
343 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4819235 |
tccggacaagcaaagagaaaattagctaaaagttcaacctcgccaatttgacttgcaaaatgaagaggagtta |
4819163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 347
Target Start/End: Original strand, 26087342 - 26087440
Alignment:
| Q |
249 |
cacagtcacatcttgaatggaatccggacaagcaaaaagcaatttagctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagttaagcc |
347 |
Q |
| |
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||||||||||||| |||||||| ||||| ||| || |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
26087342 |
cacagtcacatctctaatggaattaggacatacaaggaggaatttagctaaaaggtcaacctctccaatttgacttgcaaaatgaagagcagttaagcc |
26087440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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