View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11276_low_25 (Length: 219)

Name: NF11276_low_25
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11276_low_25
NF11276_low_25
[»] chr7 (2 HSPs)
chr7 (13-202)||(17294134-17294323)
chr7 (13-69)||(6612305-6612361)
[»] chr8 (11 HSPs)
chr8 (13-138)||(14726444-14726569)
chr8 (17-197)||(24508222-24508402)
chr8 (23-202)||(27712143-27712322)
chr8 (23-138)||(29551930-29552045)
chr8 (13-138)||(30648015-30648140)
chr8 (13-138)||(26088308-26088433)
chr8 (13-138)||(28865167-28865292)
chr8 (39-138)||(31040741-31040840)
chr8 (13-120)||(15329089-15329196)
chr8 (13-120)||(15509458-15509565)
chr8 (39-111)||(31075950-31076022)
[»] chr1 (1 HSPs)
chr1 (14-138)||(26087523-26087647)
[»] chr3 (1 HSPs)
chr3 (28-138)||(4818952-4819062)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 17294134 - 17294323
Alignment:
Q  13 gagatgaatggggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  17294134 gagatgaatggggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcgatggcaaaccgaagatgccccctagatgcg 17294233  T
Q  113 gcgatatgcaaaggagtttcaacaaactgattcgaatctataatctctagaatggacgaatcaatttgaattactgcatagaggatgtct 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  17294234 gcgatatgcaaaggagtttcaacaaactgattcgaatctataatctctagaatggatgaatcaatttgaattactgcataaaggatgtct 17294323  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 6612305 - 6612361
Alignment:
Q  13 gagatgaatggggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaa 69  Q
    |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  6612305 gagatggatggggctgaatccttgcgggtttagcttccaagcaaatgaaggtttcaa 6612361  T

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Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 14726569 - 14726444
Alignment:
Q  13 gagatgaatggggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcg 112  Q
    |||||| ||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||||||| ||| |||||||||| | ||| ||| |||||||     
T  14726569 gagatggatggggctgaatccttgcagatctagcttccaagcaaatgaaggttttaaattcataacttcagtggcaaaccggagatgacccatagatgca 14726470  T
Q  113 gcgatatgcaaaggagtttcaacaaa 138  Q
    ||  |||| |||||||||||||||||    
T  14726469 gcagtatgtaaaggagtttcaacaaa 14726444  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 24508402 - 24508222
Alignment:
Q  17 tgaatggggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcggcga 116  Q
    ||||| |||| || ||||| | ||||||||||| ||||||| || ||||||||||||||||||||||| |||||| | |  |||||||  | ||| ||||    
T  24508402 tgaatagggctgagtccttcctgatttagcttcaaagcaaacgatggtttcaaattcataacctcaatcgcaaacgggaggtgcccccgtgttgctgcga 24508303  T
Q  117 tatgcaaaggagtttcaacaaactgattcgaatctataatctctagaatggacgaatcaatttgaattactgcatagagga 197  Q
    |||| || |||||||  ||||||| |||||||||||||||||||| ||| || |||| || ||| |||||| |||||||||    
T  24508302 tatgtaatggagttttgacaaactcattcgaatctataatctctaaaatcgatgaattaacttggattactccatagagga 24508222  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 27712322 - 27712143
Alignment:
Q  23 gggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcggcgatatgca 122  Q
    |||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||  |||||||||||||| | ||| ||| || |||||||||| || |    
T  27712322 gggctgaatccttgcggattaagcttcaaagcaaacgaaggtttcaaattcataatttcaatggcaaaccggagatggcccttaaatgcggcgatgtgta 27712223  T
Q  123 aaggagtttcaacaaactgattcgaatctataatctctagaatggacgaatcaatttgaattactgcatagaggatgtct 202  Q
    |||| ||||| ||||||||  | ||||||||| |||||| ||| || |  ||||  | ||||||| ||||||||| ||||    
T  27712222 aaggggtttcgacaaactgtattgaatctatattctctaaaatagatgggtcaacctcaattacttcatagaggaggtct 27712143  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 29552045 - 29551930
Alignment:
Q  23 gggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcggcgatatgca 122  Q
    |||| ||||||||||  |||||||||  |||| |||||||||||||||||||||||||| ||||||||  ||| ||| ||  || |||||||||||||||    
T  29552045 gggctgaatccttgcttatttagcttgaaagctaatgaaggtttcaaattcataacctcgatggcaaaaggaagatgaccgttaaatgcggcgatatgca 29551946  T
Q  123 aaggagtttcaacaaa 138  Q
    ||||||||||||||||    
T  29551945 aaggagtttcaacaaa 29551930  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 30648140 - 30648015
Alignment:
Q  13 gagatgaatggggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcg 112  Q
    |||||| ||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||  |||||||||||   || ||| ||| | |||||     
T  30648140 gagatggatggggctgaatccttgtggatttaacttcaaagcaaatgaaggtttcaaattcataatttcaatggcaaagtcaatatgacccatggatgca 30648041  T
Q  113 gcgatatgcaaaggagtttcaacaaa 138  Q
    || ||||| |||||||||||||||||    
T  30648040 gcaatatgtaaaggagtttcaacaaa 30648015  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 26088433 - 26088308
Alignment:
Q  13 gagatgaatggggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcg 112  Q
    |||||| ||||| | |||||||||||| ||||||||||| |||||||||||||| ||||||||||  ||| |||||||| | | ||| |||  ||||||     
T  26088433 gagatggatgggactgaatccttgcgggtttagcttccatgcaaatgaaggttttaaattcataatttcattggcaaacggcatatgacccaaagatgca 26088334  T
Q  113 gcgatatgcaaaggagtttcaacaaa 138  Q
    || ||||| |||||||||||||||||    
T  26088333 gcaatatgtaaaggagtttcaacaaa 26088308  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 28865292 - 28865167
Alignment:
Q  13 gagatgaatggggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcg 112  Q
    |||||| ||||||| |||||||||||||||||||||  | ||||| |||||||||||  |||||| |||| |||||||  |||  || ||| |||||||     
T  28865292 gagatggatggggctgaatccttgcggatttagctttaaggcaaacgaaggtttcaacgtcataatctcagtggcaaaaggaaggtgacccatagatgca 28865193  T
Q  113 gcgatatgcaaaggagtttcaacaaa 138  Q
    |||||||| |||||||||||||||||    
T  28865192 gcgatatgtaaaggagtttcaacaaa 28865167  T

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Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 31040741 - 31040840
Alignment:
Q  39 gatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcggcgatatgcaaaggagtttcaacaaa 138  Q
    ||||||||||||| |||||||||||||||||  ||||||  ||| |||||||  ||||||| ||| ||||||| || ||||||| |||||||||||||||    
T  31040741 gatttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgaacatgtcccatagatgcagctatatgcagaggagtttcaacaaa 31040840  T

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Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 15329196 - 15329089
Alignment:
Q  13 gagatgaatggggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcg 112  Q
    |||||| ||||||| |||||||||||||||||||||  ||||||| |||||||||||  |||||| |||| |||||||  |||  || ||| |||||||     
T  15329196 gagatggatggggctgaatccttgcggatttagctttaaagcaaacgaaggtttcaacgtcataatctcagtggcaaaatgaaggtgacccatagatgca 15329097  T
Q  113 gcgatatg 120  Q
    ||||||||    
T  15329096 gcgatatg 15329089  T

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Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 15509565 - 15509458
Alignment:
Q  13 gagatgaatggggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcg 112  Q
    |||||| ||||||| |||||||||||||||||||||  ||||||| |||||||||||  |||||| |||| |||||||  |||  || ||| |||||||     
T  15509565 gagatggatggggctgaatccttgcggatttagctttaaagcaaacgaaggtttcaacgtcataatctcagtggcaaaatgaaggtgacccatagatgca 15509466  T
Q  113 gcgatatg 120  Q
    ||||||||    
T  15509465 gcgatatg 15509458  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 31075950 - 31076022
Alignment:
Q  39 gatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgc 111  Q
    ||||||||||| |||||||||||||||||||  ||||||  ||| |||||||  ||||||| ||| |||||||    
T  31075950 gatttagcttcaaagcaaatgaaggtttcaatctcataatttcagtggcaaattgaacatgtcccatagatgc 31076022  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 26087523 - 26087647
Alignment:
Q  14 agatgaatggggcagaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcgg 113  Q
    ||||| ||||| | |||||||||| ||||||| ||||||||| |||||||||||||||||||||  ||| |||||||  ||| ||| ||| ||||||| |    
T  26087523 agatggatgggactgaatccttgctgatttagtttccaagcatatgaaggtttcaaattcataatttcagtggcaaattgaagatgacccatagatgcag 26087622  T
Q  114 cgatatgcaaaggagtttcaacaaa 138  Q
    |  |||| |||||||||||||||||    
T  26087623 ccgtatgtaaaggagtttcaacaaa 26087647  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 4819062 - 4818952
Alignment:
Q  28 gaatccttgcggatttagcttccaagcaaatgaaggtttcaaattcataacctcaatggcaaaccgaacatgccccctagatgcggcgatatgcaaagga 127  Q
    |||||||||  |||||||||||||||||||||||||||| || ||||||| |||   ||||||  | | ||| ||| ||||||| || ||||||||||||    
T  4819062 gaatccttgttgatttagcttccaagcaaatgaaggttttaacttcataatctcggaggcaaattggagatgacccatagatgcagcaatatgcaaagga 4818963  T
Q  128 gtttcaacaaa 138  Q
    |||||||||||    
T  4818962 gtttcaacaaa 4818952  T

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